RnoINT0056329 @ rn6
Intron Retention
Gene
ENSRNOG00000056087 | Erich2
Description
glutamate-rich 2 [Source:RGD Symbol;Acc:1563852]
Coordinates
chr3:56814139-56815312:+
Coord C1 exon
chr3:56814139-56814174
Coord A exon
chr3:56814175-56815281
Coord C2 exon
chr3:56815282-56815312
Length
1107 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
ATTCCTTGTTTGTTTTTCAGCAA
3' ss Score
9.21
Exon sequences
Seq C1 exon
TCTTGTCCCTGAGTTTTGTATTCCTGAAATTCCCAG
Seq A exon
GTATGTGGTAATAACCATTTTATAAGTCTGGTTTGAGGCCTGGGCATGATGGTACACATCTGTAATCCCAGCCCTTGGGAGGCAGGTGAATCTTTGTGAGTTCAAATCCAGTTTGCTCTGTGTAGTGAGTTCTAGGTCAGACAGAGCTACAAAGTAAGACCCTATCTCAGAAACAATCCTCTCTGCCCTGGGCCGTGGAGCCAAGTGGAGGGACAAGTGAATTGTTGTTTAAAAAAAAAAAAAACAACTAGATGACTTATCCGGATATAGAGTGGACTCCATTGTGAGGGAAGTCAGTCCCATAACTGGAGAGCCTAGAAAGCAACAAAGACTTGGAGAACGCTTCATTGGATTAAATAAAAGATCGATTTGTACATGTATACATTTAAATAATACTTGAATAAAACCCCATATCCTAAATGTGGAAGCTTCCACCTTCCGCTGGCTCCAGTTTTCTCTAAAAGTTATCTTTGATGGCACCAGCAAACTGGACAGTGGCGTTTATCATTCAGTTTGTTGAAGCTGGAGAGAGACGTGTATCTGTGATTTCCAGAGTCAGCTCAGTGGAAAGGGTTTCCTAGGGCCTGCTGTGGATTGTATTTTAGTCTAGACCTAGAGTCCAAGATAATGAAGTGAGGAGATAGCAGAACTAGTGGATCGTTCAAGACATTACTACTGTCCCGTGCAGAATCGTCCCTGCAGCTCTATTTAGGTGGACCTCAAGGTAAGAGAGAAGAAAGTTGGTTTCTCTAGAGCAGTGGTTCTGAACCTTCCTAATGCTGAAACCCTCGTGTGGTGGTGACCCCCAACCATAAAATCATTCCTGTTGCTACTTCGCAACTGTAACTTTGTTACTGTTAAGAATCATAATCTAAATATCTGTATTTTCTGATGGACATCTGTGACCCTGTGAAGGGATCATTTGACGGCCCCCCCAACAGGGTCATGCCCCCAGGTTGGGGGGTTGGGAACCACTGCTCTAGGTTTTATAATATGGCTTCTTAGCCCATGCTTGACAGCCTGCTCCTAGTACTGTGCTTTGTTTCATTTACATCTGTACCGGTGTTGAGACGTTTATGAAGTAAAGATTCCTTGTTTGTTTTTCAG
Seq C2 exon
CAACTACCTAGACAAGACCGAAGTTGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056087:ENSRNOT00000077551:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]