RnoINT0059132 @ rn6
Intron Retention
Gene
ENSRNOG00000005679 | Fap
Description
fibroblast activation protein, alpha [Source:RGD Symbol;Acc:621253]
Coordinates
chr3:48508537-48510965:-
Coord C1 exon
chr3:48510811-48510965
Coord A exon
chr3:48508641-48510810
Coord C2 exon
chr3:48508537-48508640
Length
2170 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
AATTTCCATTTTCTTGGCAGGCC
3' ss Score
7.62
Exon sequences
Seq C1 exon
AGGAAATGCTTGCTACAAAATATGCCCTTTGGTGGTCCCCAGATGGAAAATATTTGGCATATGTAGAATTTAATGATTCGGACATACCAATTATTGCCTACTCGTATTATGGCGATGGACAGTATCCTAGAACTATAAATATTCCATACCCGAAG
Seq A exon
GTATGCAAGACGCTTTTAAGAGAGGCCTTCATCCCCCTGATGTCAAAATGAGCAATCATTACCACAAATAGAGGTGGGATCAACACTTTTGGAAAAGCTTCTTGTCCTTGTGTGTCATACAGCAAACACTGTGCTGTGCTCTATTGTTTATGTGGACATCTGTTGCTTTGGACATCTGGGTATGCTGGAAGAAGTAATCTTTGCAAGATCTACTGCAGTATCTTTGCAAAAAGCATATGGTCCAGATCATGGAGGAAAAACAAGCTTAACTTAGTTTTAATTTATATATATATATATATATATATATATATATATATATATATATATATATATTCTATGTTCCAAATTCAGGGTAAAAGTTCTGTTTCACAATTCTCTCTTGAATTCTCCTGTAAATGCAAACCAGAAAGGGAAATTCAAATATTGAATTTGATGTCTTTGTCAGGTAGTGTCAGACAGACACATGTTAAGATCTCTTGTGGACAGGTAAGTGAAGTTTTTGAGCCTCCATTTCTTCCTTAAAGCAATTAATTAAAGTCAATATGATACATATTTTTTACTCAGTTCCAAGGCTAGAGAAGAGGGACCTAGGTGTATGGGAGAAAGGCTGAGTGACAGGGAGAAAGCATTGTGACCTATTTTAAATATAGACAAAGGCAAGAATGAGGAGAGTCTGGAAAGGAATTTACCTCTTGTAAAAGTAGTGGGTATCTTTTAGAATTTTTAAAATATACATAGCTCTTCGTGCTTTTATTTTCCAAGCCCTAGTCATGAATGACTCCAGCAGGTCCCTATATAAGATAGGATGGATGTGGCATTTGCAAACTTGGCTTTCGAAACAAGCCAAAGACACCCCAAAGAGAGAAATAGAGAAGTAGAAATATAATGTTTATGTTAAAAGTCACTTAAGAAAAGGAAAGAGCTAGGAAATAAATGTTGAGATATAAGTCCCCTCAAGGACGGGGTAGAAAAATGGAAAGTTGGAGGTGCTTAGAAGTGAAAAGTCTGATACTTGGAATCCAAAATTAAAAGAACTGAGTGTTCTGAAGACTCAGTGTGAGCAGGAAGATGAGGACACTCAGAACTGAGAAGCAACTCCCACTTATCTAAGTGTGTTCCTAAGTCTTCATGTTTCTTTACAGACTGGGGACACTAAAACCTCTAGCACTGGATGCAGAAATGAGAAAATTCCAAAGAGCCAAAAAAGACTCTAGAATGACTTTAGATCAGTAACTCTCAACCTATGGGTCTCCACCCCTTTGGGGGGATGGGTGGACAAAGGATCCTTTCACAGGGGCTGCCTAAAACGTTTGGAAAACACAGATGTTTTCATTAGAATCACAACAAAATTACAGTTTTGAAGTAGCAACAAAAATAATTTTATGGATAGGGGTCACCACTACACGGGGAACTGTAATAAAGGGTCATGGCCTTCGGGAGATTGAGAGGCACTGCTTTAGTTGAATGAAAAGTTAAGTCACTGAGCACTATGCTCTCAAATGCTGTGGATTCACATTTTAACTGCAAGATTTGTTCTGAAGTAAAATAACATCAGTTCAAAGACAGTGTCTAGGCATGAGGCATGCTGTCATGTAAAATTTAGGTATTCAGTAGCACAAGAAAAGCAAACTAAGAAGAAAAATGTAAAAGCCCATGGACACCTTATTTGGTAGTGAGACTCCCCATTCTTTGGGATGGAAGCAATGGAAATGGACTGAGTGGTTTAGGGAGGAGAAGCAATCTGGTCATTCAATCAGTGCATTTCATTTAGTTCTTCTCTTTTCTTCTCTTTCAAACCGATCTCCCTACCCTTCAGAGCACACGGGTATATTGGTTATTCTCTTTTTAACTAGTAATGAAACACCTGTCTCGAAAATCAGGATAGAGTATGGGTTGTAGACATAGACTTTCACATCCCCGATAATTTCTCCTATAAATCAAGTCTCTCATTAGACACGTGAAACACGTTCGACTCTGGTTGATACAACATTGGTAATTGCCTTGCAAGTAAAACAGGAATGAAGCCCCTGGCCACTTTGCAGAACATCTTCAACTGTTATTTATTGAGCTTTCCTCACTTATTAAAATATGCCTCGAGTGCTAAAGTGTCTTTAAAACATTGATGGTCAGTAAGATTGTATCAGCTTGTAAATTTCCATTTTCTTGGCAG
Seq C2 exon
GCCGGAGCTAAGAATCCCATTGTTCGTGTCTTTATTGTTGACACTATCTACCCACACCATGTGGGTCCTATAGAAGTACCAGTTCCAGAGATGATAGCCTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005679:ENSRNOT00000008148:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=FE(13.9=100)
A:
NA
C2:
PF0093016=DPPIV_N=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]