RnoINT0060042 @ rn6
Intron Retention
Gene
ENSRNOG00000003287 | Fbxw10
Description
F-box and WD-40 domain protein 10 [Source:MGI Symbol;Acc:MGI:3052463]
Coordinates
chr10:49259194-49263330:+
Coord C1 exon
chr10:49259194-49259707
Coord A exon
chr10:49259708-49263159
Coord C2 exon
chr10:49263160-49263330
Length
3452 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTGCCTACTCTGTCCTTCAGGCC
3' ss Score
8.95
Exon sequences
Seq C1 exon
ATGGAAAACACGGAACAAAAACTCAGGCAGAGCCCCTATTTTTGTTGTGAAAAGGGATCCAACTGGGTCCCCGTGTGCCATAAGTGTGAAGCCTGTGTCTTAGCGTGGAAGATCTTTGCCACCAAAGAGTGGTTCCGGAGGGTCAACGACACATCCCAGAGGAGATTTCTAGTCAGCATCTTGGTGCAGTTAAATAGTCTGTATTTGTTACAGTATTTCCAGAATATCCTAGAGACTACCCAGGGGAAGGACTTCATCTACAACAGGTCTCGGATCAAACTCAATAGGAAGGGGGGAAAGGAGGAGGAGGTTGTAAAGTCCTCCTTGAACCAGATGTTGGATAAAACGGTGGAGTCGAAGATGAAGGAGATCCTCTGCTGGTTTGGCAACAGCACCCACCGGACTAAGGCAAATTATACTCTCTTGCTGCTGCAGATGTGCGACTCAAATTTACTGCTCACTGCTGCCAATGTGATCAGAGTCCTGTTCATGAAAGAGTGGAACAATATCTCAG
Seq A exon
GTGAGCGCAGAAAGCCCCAGAGACCAGACACAGGCTTGGGAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGAAGGGGCACAGGTGCAGACAGGTTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGAAGGGGCACAGGTGCAGACAGGCTTGGAAGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAAGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGTTTGGAAGGGGCACAGGTGCAGACAGGTTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGAAGGGGCACAGGTGCAGACAGGTTTGGAAGGGGCACAGGTGCAGACAGGTTTGGAAGGGGCACAGGTGCAGACAGGTTTGGAAGGGGCACAGGTGCAGACAGGTTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGAAGGGGCACAGGTGCAGACAGGCTTGGAAGAAGGGGCACAGGTGCAGACAGGCTTGGAAGAAGGGGCACAGGTGCAGACAGGTTTGGAAGGGGCACAGGTGCAGACAGGTTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGAAGGGGCACAGGTGCAGACAGGCTTGGAAGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGAAGGGGCACAGGTGCAGACAGGCTTGGGAGGGCAGAGGCTGCCCAGAGTGCTGGTATGGGACTATGAACCTTATCCTGACATCCTATCATTTACCAAAGGAGGAGTGATGAGTGGGGCTTCATTCTGAAAAACTCCACTGAGAAAAGCAGAAGGAAGGACAGAACTTTCGCCCTGGGGCACTGGATACAGATTCATGCCTGCCTTGGGCTCAGACCACTGCAAACTGGTGTCATTTCTTTCTTGCACTAGGGTTTGACTTGGTGTAGGAGGGGTGTGCTGAGGAAGCTGTGTTTTGTTTCTCAACTGCCATGGGCAGAAACCAAGCCAAACAACAAAACTTAGCTTTAAGAAGTTTCTTCTTACTGTGCTGCTTGTGTAAGCATGAAACCAAATCTTAGTAAGATGCTTTAGAGGCCAAACATGACTTAAAGTCCAAAATTGCCCAGGGTACTAGTGTATAAGCAATAATTTGCACCTGAGTTTCCAATAGGATTTGATAAAAAATCAGACTGTGGTCCTCTGCCAAAGCCTGGCCCAGCAGTTGGTCTGAGGCCATGTCAAGCTGTTTCTGACTATACAGACATTGCTGGACCCAGCCGGGAACCTTCTTGGCCCTGGGTATTGACAGGAAAGTCTTGAAAGTATTTGACTGGCTGGTTCTGGACAGTAAAAGAAAGCAGAAGAGAGGCCAGAGACCTGAGATTAGGAAAGGTCAGGGATCAGAGAAGTTTAGCCAGTGGTGAGTGAAGAGTGGGAGATGTGGTCTTTAGGGGAATTTTCAAGTTTGAGATCTTGAAGGTGGGTGATTCTCGGTCCCGATGGATATTTGAGTTGTGGTCACGGTCTGATGGGTCCCTCCCTGCTTTACAGATAGGTCTGCTTTTCTTGGCTGGCCTGGAAACTTAAGACTTTTCTCTCCCAGTCTTCTAAGCCCTGGGATTACAGGCATGCAGCACCACACACCACCTTTAACAGAATGCCAAAGCTGGATGACCTAGGATGCAATTAGATCCTTACACAAGAAAGAGATTAGTGATGGCTTTGCCTATGGGTACGTATGAGCACCCAGTGAATGTCTAATGCCCGTGGAGACCAAATGAGGGTGCCAGAACCCCTGGAACGAGAGTTACAAACTGTGCTGAGCTGCCCCGTGAGTGTGAGGAACCAAAGCACAGTCCCCTGCAAGAGCAACTAATGCTGTTAGCAGCTGAGCCATCTGCCTGGTCCTTCTCTTTGTATCTTTGATATCAAGGACGTACAGAATGAGACACTTGTGGGAAAGCGAGAGAATCCAAGTGCATTAAAACTAAGTTAGAGTAACGTGAGGCTCCCTAAGTCCGGGGAATATGAACCTGGGGGCTTGGTTACCCAGCATGGCAGCAGAAAGCCTGCACCTGCCCCCAGCACCTTCCACTGCAGTGTGTTCCACTGTGCAATGTGCGCATCATGTCCACACCCCTCTTGTGATGGCTCCATCCCATGCTGTAGGAATCCGCTGTTCACCTTGGGGTTGTATAAGCCTAGTTACAGATTGTGGCAAGTTTCTTCCTAGGAGAGCATCTCTCTTAAAATGTTAGAAGTTCTGGGGCTAGAGAGATGGTTCAGTGGTTAAGGGAAGGCTGTGCTTTGCAGATGTTCTCTTCTGCACTCCGTGGGCATCTGCATTCAAGCGTGCACATCTCCACACTGAGATACATTAAAAATAATAAAAAGAGGTATTTTTAATTAGTCGTGATTTCTATTCTGAATCAAGGACAGTCATATGTTGAAGGAAATCAGCCAGAGCGTCAGAAGAAAGTGGCCCTTCCTGCAGGTCCTTCTGTGAACCACACCACTTTGCATCCTTATGCTTAGAGTGCTAGCGAAATCCGCAGCATAGATTTGCTGTAGAGGCTCTCTGAGATTTTTACTTGGAAACTCGGAGGCCTTGAATCAAAACAGCAAGCCTCTGCTTCCTTCTGCATGCATGCTTGTCTCTATAACTGTCTCTGTATATGTGTTGGGAGGGGGTGTTGCTTCCAGGCCGTCAGTATCCACAGATGCTCGTGTTCTTAATAGAAAATGGTCTTATATTTGTATAGAACCTGTGTAACCCTTCCAGGGGTGTTAAAGTGCCTCTGGTTCATTTATAGACCAATGACAGACCCAGTGTTACGGCAGCTTCTGTGCTGTACAGCTCAGGGACTAGTGACAAAAACTCCCCACATGTCTGCTGTAGATGTGGGCTTTTTTATTTTTATATCAGTTTGTGGTTGATGAATCACAGATATTCAGGAAACTGGCTGTATTTAAACAGAATGAGGGAAGATAAGACCTTTTCTCTCTACCTCGTTTCCCTCCACACACTTACTTCAAAAGCAATCTTGCCTACTCTGTCCTTCAG
Seq C2 exon
GCCTCCGTGAAGACGCCTCCAATGTGATATTCTTCCCCGAGAAAACCTACAACGCTACACATGACATCTCGTATATCTCTTGGTCAGCTAGACCCAAACCCGTGTCATTCCCAATGTCCAGACATTTAGGTAATAAACTTGGGACTGAAAATGTGGACAAAGGAACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003287:ENSRNOT00000091100:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]