RnoINT0061038 @ rn6
Intron Retention
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37287517-37288074:-
Coord C1 exon
chr19:37287919-37288074
Coord A exon
chr19:37287700-37287918
Coord C2 exon
chr19:37287517-37287699
Length
219 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
GGTGGTGGCTGCATCTTCAGAAA
3' ss Score
2.77
Exon sequences
Seq C1 exon
AAAGCTGGTGAGGGCCGCCGGACAATGACCATAGTTCTGGACCCCAAGCGCAGCAATGCCATCAACATTGGCCTAACCACTCTGCCACCTGTGCATGTCATCAAGGCTGCTCTGCTCAACTTTGATGAATTTGCTGTCAGCAAGGATGGTATTGAG
Seq A exon
GTGAGACTACCCTAAGGATAAGAGGAGGGAAATGCTAGATCTTTCCTTTGGTCAATAGAACTTCCAGTCCTTCTAGTGGTGGGGATAGGCCTGCCATTTCTGTAGAGCACTCTTCCAAACCTGGAGCTCCCCTAGAAGGCCTAGGGAGGGGTAAGAGACAATGTCTTAGGCCTCAGGTCAGTACTGAAGGCCTCTGTGGGGTGGTGGCTGCATCTTCAG
Seq C2 exon
AAACTGCTGACCATGATGCCCACGGAGGAAGAGCGACAGAAGATTGAGGAAGCCCAGCTGGCCAACCCTGATGTGCCCCTCGGCCCAGCTGAGAATTTCCTGATGACTCTTGCTTCCATTGGAGGCCTGGCCGCGCGCCTGCAACTCTGGGCTTTCAAGCTGGACTATGAAAGCATGGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625:ENSRNOT00000084734:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.230
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(13.7=100)
A:
NA
C2:
PF0218118=FH2=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGGACAATGACCATAGTT
R:
TTGAAAGCCCAGAGTTGCAGG
Band lengths:
299-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]