RnoINT0062450 @ rn6
Intron Retention
Gene
ENSRNOG00000034011 | Frg2
Description
FSHD region gene 2 [Source:RGD Symbol;Acc:1592623]
Coordinates
chr14:85791490-85792257:+
Coord C1 exon
chr14:85791490-85791552
Coord A exon
chr14:85791553-85791820
Coord C2 exon
chr14:85791821-85792257
Length
268 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ACTCTCAGGGTTTTCCACAGGAA
3' ss Score
6.05
Exon sequences
Seq C1 exon
CTCAGAAGGAAGCACCCAGGAAGAGGAAACACTCTTCCAGGGACTCCAGCCAGGTCAGGACAG
Seq A exon
GTAAGTGCTCCCTTTTCCCCAAGGGTCAGCCCCCATCTCCATCATACAGGGCTCAGACAGGCAGGTGGCTAGGAGCCTCAGAGCACTTAAGGGAGGCCAAGTTCTCAGTGCATGTGGGATCTGAGGAGGATCTGCTCAGGGTGGAGGCTGGCATGCCTGGAAAGGAATGGCCAGCAGCCTCCAGGCTCTGAAGGCTCCAGAGGAGGTTCTGCAGGCAGGTGGATGGGAGCTTTCCTGGTCATTCTCCCACTCTCAGGGTTTTCCACAG
Seq C2 exon
GAAGCGAGGGCAGCTCCCATGGGAAAAAGAGACACAAGACTTCGGAAACAAAGGCTGAGCCAAGAGCCAATGGACACCAAGATGGATTATCCCATCGCCCTCAGCACACAGACCCATTACCAATTCGGAAGAACCTGGTGAGCTTTCTGCGGGAGAAGTCTGAGGAGATTTATAGAGACACAGTCCAGATGCAGGCCCAGCAGCATGGTTCCCTGCTCAGCCCTGAGCAGCTCTCTCAGCTCAGCCAGCTCTCAGGTTCTCTGACTGCCGTGGTGCACACGTTCTACAGCATGGCCACCCAAGCAGGCTTTGCCTTCCCTGCTGAGGGCTGGCTTATCCCAGGCACCATGCCTGCCCCTCAGGAGCTGTCTGGCAAGGAACCTCAGAGTCCTTTGGTGGAGGGAGGAGAGAAGACCACAGACTCTGCCAGCCCATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034011:ENSRNOT00000041857:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.808
Domain overlap (PFAM):
C1:
PF153151=FRG2=FE(13.3=100)
A:
NA
C2:
PF153151=FRG2=PD(70.3=76.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACTCTTCCAGGGACTCCAG
R:
GAGAACCTGAGAGCTGGCTGA
Band lengths:
296-564
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]