RnoINT0065501 @ rn6
Intron Retention
Gene
ENSRNOG00000021765 | Gli4
Description
GLI family zinc finger 4 [Source:RGD Symbol;Acc:1560906]
Coordinates
chr7:116675075-116677184:+
Coord C1 exon
chr7:116675075-116675170
Coord A exon
chr7:116675171-116675807
Coord C2 exon
chr7:116675808-116677184
Length
637 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TCTGCCATTTCTCCTTTCAGACT
3' ss Score
10.61
Exon sequences
Seq C1 exon
GCTCTCCCTGTTCCAGCCCTGAGGTGCCTTCCCAGACAGCAGACCCAGACCTCCGAGTCGTAGAGGAAGTGGAGAGCACCAGAGATACCTGGCTTG
Seq A exon
GTGAGTGAGCAGCCCAGGTCTCAGGCAGCCTTGGGAGCCCCTGACCGATGCAACACATTGCATGTGCTAAGGGCCAGGCCATCCTGCCTGGGTCTCGGCTTGAACCTAGTTACCTGTTTTTGTCTACTGCAGAGGCTGGGTCCAGGGGGGGGCGGGGGGGAAGGGTTGGCTGGTCCCTATCTATGGACACCTGTAGATCAGGCCCAGCACCCTCCAGATCTGATCTCTTTGGCCGGGCAGTCTTTGCCACCTGATTTTTGTGGGGTTAGATGAGTATCTTCGCAGCTGTCTCAGACAGAAGGACCACTTTTGGGAGTTCTCAAAGTTCCAGGTCCTTGCTAGCTCTTAATAACAACCTGTACTTCCTTTTCCCAGCTAAGAGAGGCATCACAGGACTAGTTAATCACCTGTGAGACTCCTACACAAGCTCAGGGCCTCCAACAGATGGGGCCTGGCTGCTCCTGACGCTGTCTTTCTAAGTCTTCTGGCACACCTGTCTCCCCACCTTACACACACACTCCCCAACCCAGCCTCTGCCCCTCCTCTGATTAGTCCCCATTCAGGCTTTCCCTGGGCTCAGCTCCTAGAACGCCACAGTAGGGGGAGACTGGGAGCTGTCTGCCATTTCTCCTTTCAG
Seq C2 exon
ACTCTGAGTGCAAGCCTGAGAAGACTCAAGCCTCTCTCAACTCCCAAAGTCTTGGAGATGGGCTGGCCTCACGTGGAAGGGCACTGAGGGGCATGTCTAAGTGTGCGGACAGCATTGACCAGGAATGTAGCTTGGAGCAGCCAGCAGGCCTGCCTCCAGGAACCAAGCCCTGCTCTCAGAAAAGAGACACTTGGCACATGGTACTCTTGCCCCAGGGAGCCCCAGGGACAGAGGGTAGCGCCAAGAAGACTGCTGAGGTGGGCAGTAGTTTGAGTCGAGACTGCCGGCAGCCGGGCCCACAGGGCACCAAGGCACACCGCTGTGAGGTCTGTGGTAAGAGCTTCAAGTACAAATCTTTGCTGCTGAAGCACCAGCGCATCCACACAGGGGAGAAGCCTTACGCCTGTCATGAGTGCGGCAAACACTTCGGGAGCTGGTGGGGCTTCATGCAGCACCACCGCATCCACACAGGCGAGAAGCCCTATGAGTGCGGCCATTGCGGCCAGGCCTTCAGCCACAGCTCACACTTCACACAGCACTTGCGCATCCACAACGGCGAGAAGCCCTACAAGTGTGGCGAATGTGGCCATGCCTTCAGCCAGAGCTCCAACCTGGTGCGCCACCAGCGGCTGCACACCGGGGAAAAGCCGTATGTCTGCAGCCAGTGTGGCAAGGCCTTCATCTGGAGCTCTGTGCTCATCGAACACCAGCGCATTCACACAGGCGAGAAGCCCTACAAGTGTGAAGACTGCGGCAAGGCCTTCCGAGGACGGTCGCATTTCTTCCGGCACTTACGGACCCACACGGGCGAGAAGCCCTTCTCCTGTGGCTCCTGTGGCAAAGCGTTTGGCCAGAGCTCTCAGCTCATCCAGCACCAGAGAGTGCACTACCACGAGTAGCCACACCCCAGTGAAGTCTGGGTAAACCTGCTCTACTGAGTGGGATAGGGATGCTTACAGGTACACAGCAGGACATGCCCTGTGTCCAGGTGTGATGGCTAAGGAAACTCCATTTCATGGTAGGTATTCAACTTGGAACCTACTCCTGACACTAGCCATTTCTGACTCCAGTTCCTGGAAGATCCCAGTGAACCTGACTCAGTAACTCCTACCCAAAAATGTACAGCCATGACCATCTACCTGTTATGACATGACTGCCTGCTTTTTTGGCTTCTGTAACCTGCTTTTGCAGACATTCAAGGACTATTTTGAGGTCTTAGTAAGCAGAGCAGCACAGCTCCTGGCTTGCTGGTGCAGACACTCAATGTGGGTTTTGCCATTACAAAACCTACCCTCACCCCTTTGCACAGCAGTCTCTAGTTTGGCTCAGAGACTGTTGTCCTGCTATTGGTCTCAATAAATTTATAACTAATTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021765:ENSRNOT00000029711:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.298
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.3),PF134651=zf-H2C2_2=WD(100=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCAGACAGCAGACCCAG
R:
CGACTCAAACTACTGCCCACC
Band lengths:
346-983
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]