RnoINT0067038 @ rn6
Intron Retention
Gene
ENSRNOG00000042269 | Gpr21
Description
G protein-coupled receptor 21 [Source:RGD Symbol;Acc:1586383]
Coordinates
chr3:21764377-21767300:+
Coord C1 exon
chr3:21764377-21764489
Coord A exon
chr3:21764490-21765078
Coord C2 exon
chr3:21765079-21767300
Length
589 bp
Sequences
Splice sites
5' ss Seq
ATGCTAATG
5' ss Score
-2.81
3' ss Seq
CTTTCATTTTCTTCTATCAGCTG
3' ss Score
8.86
Exon sequences
Seq C1 exon
ATTTACCTACGAGGAAGATTCTAGACTGACAAGCAGCTTTCAAATACTGCACTGCAGGCACACCAAGTCAGTACCACTGTGCAGTCGGGAACGCTCCTCTCTGGGAATGAATG
Seq A exon
CTAATGAGCTGTCCAAGATGCTAGAGTGTATGTGCTTGGGCACACAGGTTTTCCTTCCCTACCCCCTTTCGTCCTTTTCCTAAGCCCCTTCTCTGTGCTTTCTCCTCCTACTTCTTTAACCCCTCCCTCTGTGCCTTAGTTCTGCAGTAGGCAGGCTTTAAGCAAGCACATTCCTGCATTGCAAGGCTTTCTGATAAGGATGTATTGTGGCTTTTGTTTGGATTTCAGCCTGCAGAATCACAGGTAACATTCTGAAATTGAGCTAAGCAGATAAATTATATTAAGGTGTTTGCAGAGATAAAGTAGTACATTGGAATTAGTGAAGAAAATTAATCTTGGTTAATTTTTTTCAGTGATAATATAGCCAAATGTTTTCAGGATTACCATAAGGAGATTCTCCTACAACAGGTTAAATAAAAGAAAATGAGGTTGGGTCTGTAATTTCTTTATGTTAATCTTGGAAATCCCCTTTATGGAGGGGACTGCTTAGGGTAAAGTGGGAGGGGTGCTGGCAGTCAGAGCTAGCTAGGTTCTTTGTCTAGGTTGTGGAATGCAAAATGTAAAATGCTCTTTCATTTTCTTCTATCAG
Seq C2 exon
CTGTTCAGAGGAGACTCATTACAACTCCTGCTGAAGCTCCTAATCTTCCTCCCTCTGCCCCTCCCCCACCCTCGTTTGCCCGAAGACACAGTCCCCAGTTTGCCTTACTTCCTTGCTATGTGTATGGTCAACCTGGCAGTGTGGATGCGTCTGGGACTGGCCAGACAACTGCTGTTGTCTCTCCCTATTCCAGGAAGAATTTAAAGGGGAATTGTACAGCAGGCAGTATACCCAGCACAGCAGCAACCCCAGGAACCTGGTGACTAGGGCTCCTGGCTTTGTCACAGGGATGCAAAGCTGACTGCAGGGACAGTAGCTACTCCTGGGAACAGCAGCCAGGTGGTAGCATGAAGTGAGAGCCAGTTCCTGAGCACGAGATGAACTCCACCTGGGATGGTAATCAGAGCAGCCATCCTTTCTGTCTTCTGGCACTGGGCTACTTGGAAACTGTCAGGTTCTGTCTTTTGGAAGTGCTGATCGTTGTCTTTCTAACTGTATTGATTATTTCTGGCAACATCATTGTGATTTTTGTGTTTCACTGTGCACCTCTGTTGAACCATCATTCTACAAGTTATTTTATCCAGACAATGGCATATGCTGACCTCTTGGTTGGGGTAAGCTGCCTGGTCCCTTCCTTATCACTCCTCTACTACCCTCTTCCGATGGAGGAGGCCATGACTTGCCAAGTATTTGGTTTCATAGTGTCAGTTCTGAAGAGCATCTCTATGGCTTCTCTGGCCTGTATCAGCATTGATAGATATATTGCCATCACTAAACCTTTAACCTATAATACCCTGGTTACTCCCTGGAGACTACGCCTCTGTATTTTTCTGATTTGGCTGTATTCTACCCTGGTCTTCCTGCCTTCCTTCTTTCACTGGGGTAAACCCGGATATCATGGAGATGTATTTCGGTGGTGTGCAGAGTCCTGGCACACCAACTCCTACTTCACATTGTTCATCGTGATGACGCTGTACGCCCCAGCTGCCCTCATTGTCTGCTTCACGTATTTCAACATCTTCCGAATCTGCCAGCAGCACACAAAAGAAATCAGCGAAAGGCAAGCCCGATTCAGCAGCCAGAATGGGGAGACTGGGGAAGCCCAAACCTGTCCAGATAAGCGCTATGCCATGGTCCTATTCCGAATCACCAGTGTGTTTTATGTCCTCTGGTTGCCGTACATCATCTACTTCTTGCTGGAGAGTTCTACTGGCTGCAGCAGCCGTCTTGCCTCCTTCCTGACTACCTGGCTTGCTATTAGTAACAGTTTCTGCAACTGTATCATTTACAGTCTCTCCAACAGTGTTTTCCAACAAGGACTAAAGGGCCTTTCAGAGTCTGTGTGTACTTCTTGTGCAAGTCACACCACAGCCAAGGACCCTTACACAGTTAGGAGCAAAGGACCCCTTAATGGATCTCATATCTGAGGGGGACTCATATATTCAGTCTCTCTGTTTTCAAGGAGAGAGGATGGCTTTGGTTCACTTTTTCCTTCCATCTCTGTGCTCCCAGTTCACTGGAGATGTAGGAGCAGCTACAAACTGTCCGGAGAACCTTCATAGTTTGCAGAAGTTGTTTTCTAAATGAGATTTAAAATTAGAAGAATCAGGATGATGGAAAAAAATCAATCTTGATCCAGTCTTTGAAATGTCATGGAAGTGACTATAGTTCTAAGATTCAAAAAGAGTAAAGCCATAGTTGATACCTCTCTCTCCCCTTTGGCATGCCTGAATCTGGATGTAAAAAGAGTCAGCATGTTTAAAAAAAAACAAAAACAAAAAACAAAAAACATTTTGTTGCCCCTTTATGGATTATTTCATGCAAGTTGCAATTTATATGCAATTCTAACAGGAAATATTAAAATATATTGATGAACTAGCAAGGATTTTCTTTATCTGTGCCAAAATATAACTGTACTGCAAGTTTCAACATTCATTTAGACAGTGAAATGTTTCGTTTTCTTGCCTCTTGAGAGAAATCTCCATAGGATAAATAATGAGAGCATTGGACATTGTTCTGTAGAGTTTTGAAATGGAGCAATTGTGCAGTGAAGTCACGCAGTGAGATCCAGGTGCTTTCCCCCCGTGTTTCTGAGCATTGTGAATGCGTGTGCAGCAGTGACAGTGCTCTTCCAGGGCTTCTGTCTGTGAATACTGAGAATCTATACACTGAGCTGGGTTTTTAATGACAAAATATTTAATCTAAATAAATAATAGATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000042269:ENSRNOT00000063938:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0000116=7tm_1=WD(100=74.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTCCTCTCTGGGAATGAA
R:
CCCAGGAGTAGCTACTGTCCC
Band lengths:
350-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]