RnoINT0067138 @ rn6
Intron Retention
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211509683-211510023:-
Coord C1 exon
chr2:211509900-211510023
Coord A exon
chr2:211509799-211509899
Coord C2 exon
chr2:211509683-211509798
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GATAAGGTTTTCTCTTCCAGCGT
3' ss Score
6.7
Exon sequences
Seq C1 exon
GGAAAACCTGTCGTTAGTAACTGCTCTAGGTGACCGAGCAGCCCAGGGACGAGCCTTTGGGAACCTCGGCAACACACACTACCTCCTCGGCAACTTCAGGGATGCCGTTATAGCTCATGAGCAG
Seq A exon
GTAAGCAGGAGCCTCGGAGCCTGCCGTCTCCTCCACCGGGGTGAGGGCCGGGACTGGACGGTCTAAGTTTGTTGTATCTCTGATAAGGTTTTCTCTTCCAG
Seq C2 exon
CGTCTCCTGATTGCAAAAGAGTTCGGAGATAAGGCGGCCGAAAGAAGAGCGTACAGCAACCTCGGAAATGCGTACATATTCCTTGGTGAATTCGAAACTGCTTCCGAATACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149:ENSRNOT00000066178:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PU(40.3=69.0)
A:
NA
C2:
PF134241=TPR_12=PD(10.3=15.4),PF134241=TPR_12=PU(38.0=76.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTCGTTAGTAACTGCTCT
R:
TGTAGTATTCGGAAGCAGTTTCGA
Band lengths:
234-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]