RnoINT0067993 @ rn6
Intron Retention
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10457207-10460133:-
Coord C1 exon
chr4:10459919-10460133
Coord A exon
chr4:10457277-10459918
Coord C2 exon
chr4:10457207-10457276
Length
2642 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTGGCCTTTCTTTTTAAAGATC
3' ss Score
10.04
Exon sequences
Seq C1 exon
GAAACAACAAAACGGCCGCTGTGCTACCTCCGAGTCCTTTGCAGTCCCTGCCGGGGTCCCTCATTCTGGACTGCTCTTCTGGAAAGGTCTATAGAGCAACTCTTGACCAGTCATACTTGATGGGTTTCCTGTGGAACGCCCAGCTAGACTGTGAGAAAATGGCTGCGCTGCATTGTGCACTGTCCTGTGATTCAGACCCAGGTTTCCCAGAACAG
Seq A exon
GTGAGAAGATTGCTCAGACTTAAAAACTGGCAACAAATGATACCCAGGGTACTTACTTAGTGTTTCAAGACAATCAGAAGTTAGTGTTTGCTCTGTAAGAGTGTCTTTGTTTGAGCATAGTCTCCCTTGGTGCTTCCTCTTTGGTTGGCCCTGTGTAAGACCTCTGGCTGTGAAGGTAAATCCATCTGTCTTTTGAGTTCAGTTGTTTCTTGTACCCATCACATCGGGTAGCCTAAATCAGCTCTGGCTTAATATTAAATGGAGAAGCCCCCAAAGAAGCAATTCATAACGTTTAAGTGGCATGCTCTTCTAAGTTGTGTGGTGACATCTTGTGCCATCCTGCTCCACCTGGCCTGGATTATAAACTGTCACTTTGTCCAGTGTATTCACATTGAATTTTCTACCTGTCTGTTCATTGTGTAGCCGCTGCCTTGTTACCAGATCACTGTCATAGTTCTGTGTTCATATAGCGTGCTTATGTTCATAGACTCGAGTTTTATCTAATAATGGCCGTGGCATTGGATATGCCAGAGAGAAGCCATAACGTGTTTCCTTTACATGAGGAGTTGAAAGTTCTTGACCTAACGGGAAAAGAACAAGCGTCTTGTCAGGGTTGCTAGGGTTGCTGCTGCCTATGACTTCAGCCCTCATATGGGGTCTCCTAAAGATAGAGGGTAATTATTTCCTCTGCTCTCTCCTCTTCCTTTCTCTGTTTTTCTGAGATGAGGTTTTGTTCTGTAGCCCGGGGTGGTCTGGTTCTTATTTTGTGGTTCACACTGGACTCACAGAGGAAGAAGTTCTCGTTGGTCTCCCAAGTGCTGAAATTTCAGGTGTGAGCCCCCCAAACTCGGTACTCTACTGGCTTCTCAGTGCTGTAAACTAGTGCTCCAAGGACGTGATCAGCATATAATGAGTTTCTCAGATGACCTGCCCCCTCCTCCCTGTTTGTATTTGGTATAATGCATTACCAAAAGTGCCAAACAGGCCAGGTCTAGTGCCTCACACCTCCAATCCTGAATGCTGAGACAGGAGATTTCTGTGGGTTCAAGGCTAGCCTGGGCTATACTGTAAGTTTGATGATATCTTGGATTACAGAATTAATTCCTGCCCCAACCTTCTCAGAAGAAACAAACACCAAGGGTCTAAGGTCTTGTGGCGAATATTTATTACATTTTTAATAAGATAGCTTACTTTGTATTGTACACTGCCACTTATAAACCACCGTTTTGTCATTTACTTTCTGAAGCTATTCGGAAAAAGTCAGGAAAATCCTCTTATCAATCAGTGATGAATGGGGTTAGTGGTTGGCTAGTTCATTGGAAAAACATAAAACATAAAAACACACATTTATTTGCTTACCTTTAATGTAGACCAAGGCCCATTCTTTGTGAATGAGCTAAGTAAGCATTGGTCATTTTCCTTCCATAAAACTAATACTCTCTGATTTCCTGTCTTTCCTAAAAGGTTTGTACATGTGGATGCATATTTACATACGTCTTCATGAGTGTACATGCATGTGTGTGCGTGCACGTCTATGTGTATGCGTACTGAAGGCCGGAGGTAGCATCGGGTGTCTTCAGGCATTCTCCACGTTCATTTTGAGGTCTCCGTAAGCCTGGAGATTTGCTTTTCTGCTAGACCAGTCAGCCAATGCCTCTTGCTTCTGGCCGGCTTCAGGGTTATAGACATGTGCTGCACCCTCCTTTTCATGTGGGTTCTAGGGATCAGGCTGTCATGTTTGCAGGACAGTCACCTTGCACACTGAGCCATCTCCTCGGCCCCAAAATGCTTTATTTCTAAGGATATCAGTAATGTGGACTTTCCTTTACACTCTTCATACTTGTTCTTCTACATCCAGTCATTTTTAGTGTTTTAGAGCCCAACTATATAGTCTTGTCATTGTCATGTTATAGAAACATGACGTTGAGTCTTGCCCCAGTGTGCAGCTTTCGTTGATGATATCTGCATTCAACTTGTTTGTAGACACTTGTATTAAATCGTCTATGTAAAAATAGGTACAGCTGGCACACGTAGATTTAGAGCAAAGCATCCCGTCGAGAGTGAGCTATGGCTGGGCATGTATGTCTTCCCTCAGTCATCAAGTCAAAGGCGAGAACATCTTTCTTCTAGCAATTGAACGGAGGGATAGAAATTCTGTGAGAAGCTGCTGGTATAGCGGGTTATTTCTGTCAGCTGAAAGGGAAGCACCGAGGCATTCCTCACGGTGAGCGGTGTGATGGTGTTCGCTCTGTGGTGGACTTTAACCCTAGGCTGGTGTCTGTAAGCCCAGTGTGTGTCCTGTGTCCAGTAGATCTCTTGATGAGCACTTTGCATAACACCATCAATTCTTGAAAAAAATGCATATTGGGTTGAGGAAGGTTCTTCTGGAGGCTACCCAAAGGATTCTGTTAAAAGGATATCTACCAATAACAAATACTATCATACTCAGCCAGGACTATATTGGTTTTTAAGCTATAGGTATATTTCCAGGACACTCCAAAGTAGATATAGAATTTTATAACTTCATTCATTATATATTATACATTATACATATATTATATATTACATATTTTTGTATTACTTTGCTGGGACACAGTACAGATTTAAAAGCCAGCAGGATTCTGTGGCCTTTCTTTTTAAAG
Seq C2 exon
ATCGTTCAGTGGGTTTCTGAGCGTGTCTCTGCCTGCCATTCATTTGACCTCATTCAAGAATTCCTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801:ENSRNOT00000039953:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]