RnoINT0068575 @ rn6
Intron Retention
Gene
ENSRNOG00000036831 | Gtsf1
Description
gametocyte specific factor 1 [Source:RGD Symbol;Acc:1310791]
Coordinates
chr7:145037724-145038582:-
Coord C1 exon
chr7:145038456-145038582
Coord A exon
chr7:145037808-145038455
Coord C2 exon
chr7:145037724-145037807
Length
648 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
3' ss Seq
AAATCTCTGTTGTCTTGCAGTCA
3' ss Score
7.97
Exon sequences
Seq C1 exon
AATCATCCTGATGTCGCAAACAAATTGGCTACTTGTCCCTTCAATGCTCGGCACCAGGTTCCCCGGGCTGAGATCAGTCATCACATCTCGAGCTGTGATGACAAGAGCTGTATTGAGCAGGATGTGG
Seq A exon
GTAAGCCAGACTAGCTGAAATGCCCCAGGATTCCAGGGTCGGCTGGCCAGTTTGGAGTTACACTACACCACTGGCTTGCTTTCTGGCTTTTACCATTTCAAAAGAATACTTTTCTGCCTTTGAGATGATTATATCATTGTAGCAGTGGGTTGTTAGCGTCTATATAGGTCAGACTGCTTTCTCTTCTGAACAGCCTGATTCATTTACTATTATAATAAATCACCTAAAAATAAAGTCCTTGAGGCTGGAGATGGAGCTCAGTGGGTCAAGCACTTGCTTCCCATAGATAAAGCCCTGGGTTCCAGCTCCTGTACCACAAAAATGGGCATGGTGGTGCTGACTTATAATCCTGGTACTCAGAGTTAGAAAGCAGAAGGTTCTGGAGTTCAAGGTCATCTTCCAGTCTGAAGCCAGCCAGGAACACAAGACCCTGTCTCAGTAAATAAATAATCCTGTTACTGCCATAAATATGGTAACAGTCTTTGTTTCTGCTGCTTGTTCCTGTCAGCTTTCACTCTACCCATATTTAGAAACAAAGATTCAATAGGCTACCTTGCAGCCTTTAAAGCCCTTAAATCCCTTAAGCAGAATAACCTAACAGATACCACATGCCCTGCCTTTATATATCAAATCTCTGTTGTCTTGCAG
Seq C2 exon
TCAACCAAACCAGGAACCTTGGACAAGAGACTCTGGCTGAGAGCACATGGCAGTGCCCTCCTTGTGATGAAGACTGGGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036831:ENSRNOT00000055275:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.138
Domain overlap (PFAM):
C1:
PF052537=zf-U11-48K=WD(100=62.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCATCCTGATGTCGCAAACA
R:
TCCCAGTCTTCATCACAAGGAG
Band lengths:
206-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]