RnoINT0069111 @ rn6
Intron Retention
Gene
ENSRNOG00000018870 | Hapln2
Description
hyaluronan and proteoglycan link protein 2 [Source:RGD Symbol;Acc:621854]
Coordinates
chr2:187401289-187401786:-
Coord C1 exon
chr2:187401704-187401786
Coord A exon
chr2:187401345-187401703
Coord C2 exon
chr2:187401289-187401344
Length
359 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCAACTTCTTCCTTCTGCAGGAC
3' ss Score
9.99
Exon sequences
Seq C1 exon
GCAGCCGGACATCCTGAAAGTCTGATTCCCATCTTGAGAGCCTCTTCCGAAAGGCCATATGTGGCCTGGCACAGAGGGCACAG
Seq A exon
GTGAGGGCTTTGTGGGGGGAAGGGCAATTCTGCTGTTTGGATGGGGTCCATATGGAAATACAGAGCTGGGTCCCCACCCCTCCTGGCCCAGCACCCTTGTACTTACAGTCGATCTGTCCCTCCCCGGGTCTAAGGACAGGACAAGTAGCAAGGCCCACTCTCCACACTCTTTTAGGTAATTGCCTGGATTGCTTTAGTCTGTTCTCCACCATCCCATTGGAGTCTTGCCCTGGCTCCAGAACATCAAGTGCCATGGATTCAGTCACAGCTGGCTTAGTGCGCTGTGTGAACCTAGGCCTCAGTGCCTTGAACCGCTGGGATCCCTAATGCACCCCCACTGCAACTTCTTCCTTCTGCAG
Seq C2 exon
GACAGGAAGCTGCTGAGCACTGCTCCCTTTGCCTCTGAGGAGAGATCATCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018870:ENSRNOT00000025624:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]