RnoINT0070094 @ rn6
Intron Retention
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176733123-176733509:-
Coord C1 exon
chr3:176733378-176733509
Coord A exon
chr3:176733285-176733377
Coord C2 exon
chr3:176733123-176733284
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
ACCCTGTCCTCTCTCCACAGGCA
3' ss Score
13.93
Exon sequences
Seq C1 exon
TACCTACCAGCAGGTTCTTGGAGCGGAAGAACTACAACATCCCCGGTGGACATCATAAGCTGAACCAGAGCCAGGACAAGGCTGTCAGGAGTGCTCTGCAGAAGCAATTCACAGTCATCCAGGGCCCACCAG
Seq A exon
GTGGGGTCCATTTGCAGGAGCCCCTGCAGGAGGAGGGACTGCCCTGTGTGGGCAGATGTGGCCATAGGAACTCACCCTGTCCTCTCTCCACAG
Seq C2 exon
GCACAGGGAAGACGGTTGTGGGCTTCCACATCGTGTACTGGTTCCACAGGTCAAACCAGGAGCAGATGCCAACTGGCAGCAGCCCTAGTGAAGAGGAAAAACTGGGGGGCCCGTGTGTCCTATACTGTGGTCCCTCCAACAAGTCCGTGGATGTCCTGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267:ENSRNOT00000017787:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.622 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PU(13.4=55.6)
A:
NA
C2:
PF130861=AAA_11=FE(29.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAGCTGAACCAGAGCCAGGA
R:
TCCTCTTCACTAGGGCTGCTG
Band lengths:
174-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]