RnoINT0070510 @ rn6
Intron Retention
Gene
ENSRNOG00000016967 | Hfe
Description
homeostatic iron regulator [Source:RGD Symbol;Acc:2793]
Coordinates
chr17:43666928-43667427:+
Coord C1 exon
chr17:43666928-43667203
Coord A exon
chr17:43667204-43667316
Coord C2 exon
chr17:43667317-43667427
Length
113 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGG
5' ss Score
5.5
3' ss Seq
TTTTCACGTGTTGTTTTTAGAGC
3' ss Score
9.41
Exon sequences
Seq C1 exon
TGCCTACTTTGGTGAAAGTGACTCGCCACTGGGCCTCTACAGGGACCTCTCTAAGGTGTCAGGCTCTGAATTTCTTCCCCCAGAACATCACTATGAGGTGGTTGAAGGACAGCCAGCCCCTAGATGCCAAGGATGTCAACCCTGAGAACGTGCTGCCAAATGGGGATGGGACCTATCAGGGCTGGCTGACCTTGGCTGTGGCCCCTGGAGAAGAGACAAGGTTCAGCTGTCAAGTGGAGCACCCAGGCCTGGATCAGCCTCTCACTGCCACTTGGG
Seq A exon
GTGAGGACGGGCATACAGGGCTGTAGAGGTGGTCACCTTTGCAGGGAGAGAGCAGTCTGCTCTGGGATGGGATGTGGTAGTCATGGACTTGAATTTTCACGTGTTGTTTTTAG
Seq C2 exon
AGCCCTCACGGTCTCAGGACATGATTATTGGAATCATAAGTGGGATCACCATTTGTGCCATCTTCTTTGTTGGAATTCTGATCCTAGTCTTAAGGAAAAGGAAGGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016967:ENSRNOT00000022809:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.099 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0765410=C1-set=WD(100=88.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTCTGAATTTCTTCCCCC
R:
ATCATGTCCTGAGACCGTGAG
Band lengths:
242-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]