RnoINT0070511 @ rn6
Intron Retention
Gene
ENSRNOG00000016967 | Hfe
Description
homeostatic iron regulator [Source:RGD Symbol;Acc:2793]
Coordinates
chr17:43667317-43669327:+
Coord C1 exon
chr17:43667317-43667427
Coord A exon
chr17:43667428-43668779
Coord C2 exon
chr17:43668780-43669327
Length
1352 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TGGGTCTCTTATCTTCCCAGGAG
3' ss Score
8.61
Exon sequences
Seq C1 exon
AGCCCTCACGGTCTCAGGACATGATTATTGGAATCATAAGTGGGATCACCATTTGTGCCATCTTCTTTGTTGGAATTCTGATCCTAGTCTTAAGGAAAAGGAAGGTTTCAG
Seq A exon
GTGAGTGGGAACATGGAGGAAGTGTCATGGTGCATCTTCCTCCAGGTCACACAGTTCCTACAGAAAGTGCCAGCCCATCTCTGGGAGTGTTTTGCTTAGTTTTGTTTTTCCCAGACAAGAAGTTCCTAATTCAGGAAACACCTTCTAGGCCCCTACTGTTGTGCAGGTGTTATTTAAGGTAGAGGGGGATTTCAGGTTAAGAAAGTCACTGGGTAAGTCCCAGACCCTAAATCTAGTGTGGAATAGAATTCAGGACAAGTAGAGGCAGCTAAAGAAGAGCCCTGAAGAATGTGGGGTGTCACTGGATGAAATGCTCAAATTACATCCAGAAAGGATATATAAAACTGGTATGGTGGTTTGTGACCCTAATGTCAGCAAGAGGATTGCCAAGAGTTAAAAGCCAGCCTCGGTTGGTTACATTGTGAGACCCTGTCTTAGCACACACACACCAGCACCACCACCACAACCCACAACAACAACAACAACAACAATGCTGAGTGGGATAGTGTATTATTGGGCGTTGTCCCTGACTTCCTCTGTCCCTCACTCACAATGTATTCTCTTTCCCCCTCTCTGGGTATCTGCAGCATGGATAAAACACAAGGGAGAAAGCAGTGAGCCAACATAGGTCCGTGGAACATTATGTTCTGGTAATTGGGCAGCTGGCGAAGTCACAAAAGCAAGGGAACAATGTCTGTGTTTAGTGAATGGGTTGTGAGGAAGTGAGTTAGGTGACAAGGAAAGCCATTAGGTAGCTAGCTACTAAACAGCTCCATACCAATGGTTTACCTCCAGACTGTCTCAACCCGGCAGCAGCCCCAGTCATAACACAGAGATTTTTTTAATAATTACGAAATCTTGGCCTTAGCTTGGCAAACTCTCAACTTACTCATTTAAGTAAATCTGACCATCTGGCCCTGTCCTGCCACTGCCACATAGCTCATTACCTTACCACCATACAGGGTCCTGTTTCTTCCTTTGTGTCTGGCTGGCAAATCTCCAACCTCAGTCTCTTTCCCAGAATTCTTATCCCTCCCAGGAAGCTCCTGCTTCCCTATAGGCTGTTCAGCTTTTCTTAAACCAATCAGAAGATGATGGAGATGTTTACAAAACACTGAGTCAGGTGATGCTTCATTAGAATAACAGTACTGAAGTCCTGCCTGTACTCAAGACCTGGTAATACAAAGGCAGCCTTTACTCAGTACACCAGAGATTCTCCCACAAAGAGTAACCATTTCAGAAATCCAATGGAGTCCTTGAATAGCAAGGTTGGGGATGGAGGAGGTGGGAAGGGACAGTACAAGATGATGCCTGGCCAGTGATGTCCCTTCCTGGGTCTCTTATCTTCCCAG
Seq C2 exon
GAGGAACCATGGGTGACTATGTCTTAACAGAGTGTGAGTGACCTGCAGCATGCAGAAGCACAGAAGAGAGAAGACTCAGCCAAAGACTTGGAGGGGACACACTTGCTCCATTCTAGAACACAGCTGGACCTAACACACAGAAACTGCCTGAGGACTCTGCCCTTAGCTTTCCTGTTTGCTTTCTTAAGGTGTTTTCTCCAGTTAAGTTCAGTTCCTGAATAATAGTGACTGCCCCAGCTGCAACCTCTCCCTTCAGAACCAGTCTCATGATCTTTAAGCTGCTACTTGCAGGCATCCTTCGTTTTCTGCATCCACCTAGACTTCGTATGTCTACTTAAAAAGCCCCACTAAATTTGGGGGACACATGATTCATTTCCACATCTGAAGAAGTTATGAACCTTCATCCTGGGATGCACACATTCTTGTGCCAGAATTTTTCATACATATCCTAGGACCCATTCAATTGTCATTTGAGCCTCTCTATCTGTTAGTGACTACTCTGACTTCTCTGCCATTGGAGTGTTATGGCAATAAAGCTATGAACGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016967:ENSRNOT00000022809:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACGGTCTCAGGACATGA
R:
CAGCTGGGGCAGTCACTATTA
Band lengths:
348-1700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]