RnoINT0071651 @ rn6
Intron Retention
Gene
ENSRNOG00000007611 | Hoxb7
Description
homeo box B7 [Source:RGD Symbol;Acc:1559918]
Coordinates
chr10:84135116-84138637:+
Coord C1 exon
chr10:84135116-84135642
Coord A exon
chr10:84135643-84137848
Coord C2 exon
chr10:84137849-84138637
Length
2206 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACA
5' ss Score
8.88
3' ss Seq
CCCCCAAATACTGTGAGTAGGGA
3' ss Score
0.96
Exon sequences
Seq C1 exon
CACGTGGTCCGAAGAGGAAAAAGGGGGTCCTTTTGGTGTAAATCTGGACTCTAATTCTGTAATATATCAAGGAATCTCGTAAAACCGACACTAAAACGTCCCTGACTACAAATCATCCGGCCAAATTATGAGTTCATTGTATTATGCGAATGCTTTATTTTCTAAATATCCAGCCGCAAGTTCGGTTTTCGCTCCAGGAGCCTTCCCCGAACAAACTTCTTGCGCCTTTGCCTCCAACCCCCAGCGCCCGGGCTATGGAGCAGGTCCGGGCGCCCCCTTCTCCGCCTCGGTGCAGGGTCTGTACTCCGGCGGTGGGGGCATGGCGGGCCAGAGCGCGGCCGGCGTCTATGAGGCCGGCTACGGGCTCGAACCGAGTTCCTTCAACATGCACTGCGCGCCCTTTGAGCAGAACCTCTCCGGGGTGTGTCCGGGCGACCCCGCCAAGGCGGCTGGCGCCAAGGAGCAGAGGGACTCGGACTTGGCGGCCGAGAGTAACTTCCGGATCTACCCCTGGATGCGAAGCTCAG
Seq A exon
GTAACACCGCGCTCTGAGCGGTCCCGAGCCGCAACGTCCGGGCCACAGTCCCCAGAAGGGCTCCCTTCCGGCCAGGGCACCCTTCTCTGTGTCCAGGTTACTCCCGACTGCAGATCGGCCATAGCCACGCCGTTTAAGTCTGGGCTGGGACCACGCGCGCCGCCCCCACTCCCAGTTTTGCTTGGTGCTCTCAAGGCCCTGGAGGATCTCTTTTTGCCGACGCCAAAGAGCTCAAAGCCCCCAGCCCGCCCCCAACCCTTCCTCCGGGCCTTTTAGCTTTAAATATTTATCAGCAGCGCCGGCACGGGTTGGAGACGAGGCCGTTTGTCTTGCCCAGGAAGGCTGGGGTTTGCAGAGAATAGCCATTAGGGTCTCTCTCCTCTCTACCCCCTTCCCTGCTTGAGAGCTTAGTTCTGGGTGTGTTCCCCCAGCCCTAGCTTGGGTAAGATATGGAGGAGGGGGCCATGGCGCTAAGCAATTCTCCCCTCCCCCTGCCTTTCTAGCCAACCCCGCTCCCCCATTATTCCCATCAGGACAATTAGAGGTGGGCTCTAGAGGCCTGGCGGGAGGAGGGGGATACAGAAGAAATGAGGACCCAGCCAGGGACGCAGAGCCAGAGAGTGGTGGAGTTAGTCTGAGACCCAGAGCGATGAGTCTACTGACCCCTCCTGCCCCTGGTGGACTTAGGAGGGTGGGCTAGAAGGCTGGCAAGAGCCCCATGAGACCATAGCTTTTTCAGGTGTCTTTCCTGGGGCTCCGTGGGCCCCTGAAGAACAGCCAAGTTTGGTGGTATCACTCCTGAAAGAGGACTTCGGGGAGGGCTAGGACTCCGTGGAACCAAATCAAGATTTAGCCACCCAGCAGCTGCTTTAGGAACCATAAGACACCAAGACTTCCTTCCCCCAGGTCTCCTTCAAAGCTTCCTCACAGTTCCTTTACATTTCCCCAAGATAGATGGTCTTGGGAGCCAACTCTAAGACTCAGAAGGCCCAAGCCAGTCAGAGAGAGTCCCAGACTCCTGGGGTTGGGGGCCATGAGGAAACCAGCTCTTGACTATTGTTCTTCACGGTTTCTATTACCTACTCTGTAATTGAACTGACCTTCTGGTTGGTCTATCAAAGCCCCCCTCCCTTTTTTTCCCCTCGTAAATATTTCATCTTGGCTTATAGCTGACTTGAAATTAAGGTCCTTAGCCCCTCCTCTCTCCTGTCTCCTTCCCCAGAGGGCTGATGCCAGCATCTCCCCAGTCTCCTTGGGGTTCTGAGCGTGTGCTAGAAGTTCTCGATACCTTCAGCCCCAACATAGGAGCCTTCACCTTCCTCTCTCTTGTAGTCCACGGTCACTCTTTTCTTCCTTGCAGTGCTGGAAGCCCAAAGATTGCTTGAGACAATTAGGTTTTCTGTGCAGGAAGGCAGGCGGGTAGGGTAGCCAGGCCTTGCTTGATACTTACTGGGAAGGAAACATCAGAAAGCAAGTGTTGTCAGACCACCAATTCCAATTCCCCATTCCATAGCAGGTTTGGGTGGGGACTGGGCCTGTGGGCCTTTTTATTTCTTTTCTTCTCAGACTAGGCCTGGGGCCCCACTCTAGAGACACTAATATGGTTCTCCGAGCAGTTCCGTACCTCAAAGGCCATCTGAAGGGAAAGGGTAAACTTGGAGCCCATGACCTCAGGGAGTGACTGAGGGTTAATTTGCCCTCGTTCTATGGTAGCCTCTCTGGAATAGAGCCTTAAGGAGCCAGCAGCTGACAACTACTTGGGTTTCAGAAGCCCTAGGCTGAGAAAAACCACCTTTTGTGGATAATGGCACTATCTGGTGTGGTGGGGCTGGCCTATGAACCCAGCACTCGGCACTTGGGGAGGCTGAGTCAAGAGGATTGCTACTAGTTTGAAACCAGCCAAAGGCTACCTAGCAAGACCCAGCTTAAAAAATAGAACAATTCTTGTGGGGACACACACACACACACACACACACACACACACACACACACACGAAGAAAAGAAAGAAAATAAATGTTTGCCCTGAGAAGCTTGGAATTTTTCTGCACATGGTAAAGGGGTTAATTTAGTTCCAGCAAGGTGGTCTTTTTCTGCTGCCCTCAAATGTCAGACCACCTAGGAAGGAGGTCTGAATTTTCCTGGTGTTTTTCACACAGTTTTTTTTTTCCCTATCCCTCTCCCCCAACCCCCAAATACTGTGAGTAG
Seq C2 exon
GGACTGAACGAAAGCGGGGCCGCCAGACCTATACGCGCTACCAGACCCTGGAGCTGGAGAAAGAATTTCACTACAATCGCTACCTGACTCGGCGGCGGCGCATCGAGATCGCGCACGCGCTCTGCCTCACCGAAAGACAGATCAAGATCTGGTTTCAGAACCGGCGCATGAAGTGGAAAAAGGAGAACAAAACTTCAGGCCCAGGAACCACTGGCCAGGACAAGGCGGAAGCGGACGAGGAGGAAGAGGAGGAAGAGTGAGAGACAGAGAAAGGGAAGAGAGGAGGAAAGAGAAGAGAGGGAGAACCCAATTGTGGGAACTGAAGCACGGAACTCAAATAAGGGGGCAAACTGTTTAAGTGAAGAAGTCTGAAATTTTAAGGAAAGAGATGGGTGAAATTTGGGTTTCTTACTACTGTAAAAAAAAATACTACCTATGGGAAAGTGTGTGGTCTGTTTTTGTACAGTCTGGGAAGGACATTATCTACCTGCTCTGTGGCTTTTTGGAATGTGCCTCCCCTTTTCTATGTTGCGAGTAAGGTCTTTGTAACATCTTGCTGTTTTGTAAGCCCTCTTTGAAGCTGTCTTTGTGAATTGTGGTTCCAGATGAGCCGATTAACCTGTGGCTCCTCACCTACCATATACTTCCCAGTAGTACTAAGAGGGTCTTAGGGAGCCCCGAGGATCCACTAGCTTCTGAGCCTGGTGCATTTGGCTGCTGATTCTAGCTCCTAACCATGAGCCTCTTTCTGTATATCTGAAGGATGGAAAAAATAAAAAAGGATTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007611:ENSRNOT00000031035:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=NA C2=0.419
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0004624=Homeobox=WD(100=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]