RnoINT0076086 @ rn6
Intron Retention
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3378767-3379189:+
Coord C1 exon
chr7:3378767-3378880
Coord A exon
chr7:3378881-3379090
Coord C2 exon
chr7:3379091-3379189
Length
210 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TCTCTTCCTTATCCCCTTAGGAG
3' ss Score
10.36
Exon sequences
Seq C1 exon
GACTGTGCCCAGGGCACGGCCAAGTGTGTGGTATTCAGCTGCCCACTCTACAGCTTTGACCGTGCAGCCGTGCTTCATGTCTGGGGCCGCCTCTGGAACAGCACCTTTCTGGAG
Seq A exon
GTGAGGGCACCATTGGGGTTCCAGGCTGGGCGTCTTCTGCAAAAGCCCCATTGGAGTTTGCTTCGTCCCCTTTCCCATCCAAACGCAGCACTCTATAAAGCCAAATTTACCCTCTGCCTTGGCACCGTTCAGTCTGTAATCTCAGTGACTGGGGAGGGTTGAGGGGAGCATGGGCATTGAGAAGGCGGCGTCTCTTCCTTATCCCCTTAG
Seq C2 exon
GAGTACATGTCCGTGAAGTCCCTGGAGGTGATCGTCCGAGCCAACATCACAGTGAAATCCTCCATTAAGAACTTGCTGCTCAGAGATGCATCCACAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905:ENSRNOT00000030453:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=PD(2.7=34.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGCCAAGTGTGTGGTATTC
R:
CTGTGGATGCATCTCTGAGCA
Band lengths:
196-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]