RnoINT0076087 @ rn6
Intron Retention
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3379091-3379403:+
Coord C1 exon
chr7:3379091-3379189
Coord A exon
chr7:3379190-3379277
Coord C2 exon
chr7:3379278-3379403
Length
88 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGC
5' ss Score
6.64
3' ss Seq
TTGAGCTTCTTGTTTCTCAGATC
3' ss Score
8.58
Exon sequences
Seq C1 exon
GAGTACATGTCCGTGAAGTCCCTGGAGGTGATCGTCCGAGCCAACATCACAGTGAAATCCTCCATTAAGAACTTGCTGCTCAGAGATGCATCCACAGTG
Seq A exon
GTGAGCTGCCAGGCTGGCGGGTGTGGTGGGCGGGTGGGGACTCTCCTCCTTCCCACTCACTCCAGCTTTTGAGCTTCTTGTTTCTCAG
Seq C2 exon
ATCCCAGTGATGGTATACTTGGACCCGGTGGCTGTGGTTGCAGAAGGAGTCCCCTGGTGGGTCATCCTCCTGGCGGTGCTGGCTGGGCTGCTAGTACTGGCCCTGCTGGTGCTGCTGCTGTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905:ENSRNOT00000030453:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0035715=Integrin_alpha=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGAGCCAACATCACAGTGAA
R:
ACCAGCAGGGCCAGTACTAG
Band lengths:
174-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]