RnoINT0076088 @ rn6
Intron Retention
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3379278-3382365:+
Coord C1 exon
chr7:3379278-3379403
Coord A exon
chr7:3379404-3382252
Coord C2 exon
chr7:3382253-3382365
Length
2849 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCTATCCTTCAACATCCCAGTGC
3' ss Score
3.73
Exon sequences
Seq C1 exon
ATCCCAGTGATGGTATACTTGGACCCGGTGGCTGTGGTTGCAGAAGGAGTCCCCTGGTGGGTCATCCTCCTGGCGGTGCTGGCTGGGCTGCTAGTACTGGCCCTGCTGGTGCTGCTGCTGTGGAAG
Seq A exon
GTGAGGCTTGAGGAGGGATGGAACAAGTATGAACTAGACTTAGAGTGGATAACCTCTCACCTACACGTGCACTCATCCCTGCGTGGGTGCCATTTGCCAAAGGCCAGCTTTGACAGGGCAGGTACACTGTTTAGGAGAGGCATGGAGTCAGCGATTAATCACTCAGCAGACTTTTTTCTGAGGTAGTAAAACAATTCTCAGGGGCTAGTGAAAAGGATGAGAAAACACACACCCACACATACACCTACATACGCACATACACACACACACCTACATACACACATACACACACACCCCTACATACACACATACACACACACATACACACACACACCTCTACATACACACATAGCACACACATATATACACATATACACATCCATACATATACACATGCACACATACATACATATACATACACATATATATACACACACATACACACATAGATACACACATACACATAGATACATATACACACATATATACACATATACACATGCACACATACATAAACACACATAGATACAAACATACACACATACATACATACACACATATACACATACATACAGACACACATACATACACACATAGACATGTACATAAATCCATGCACATACATACACACTCATAGATACATACACATATACATACACACATACACACATACAGACACACATATGCACATACATACATACATACACATACAGACACACACATACATACACAATCATAGATATATACACACATACACATATACTTGCACACATAACACACACACACACACTTACTTGGTGGCTGAAGCAAGGCTCTAACAAGCTCCAACAACTTTATTTTCCCCTATAGCTTATATATCCCAGCAAAATCTTTCAAGGAATATGCAAATTACCCTATGGTTACATTCTATTTTTCTTTAAGTGAATAATTACAGTCAGTTATATGTAAAAAAAAAGCATGTTCCCAATACCCTTACATGGTTAAATGTTTTACATATTACAGGTAAAAAACAAATTATTCCCAAGGACATGTATGTTCATGTTTAAGTAATTTGTTACAGATTAACAAAGGGTAAGTAGGCAAAGTATTTTTATCAGCCTCTTGTAGGGAGGCTGCAATTTATGGTTACAAAAATGGATCAATTATTTTATTATTTATCTTGAAAAGTAATCTTATAAAAAATTTTTTAAAAGAATCACAAATGTAAACTTTTATATAAAGAGCAAGCAGCCATTTCTACTTTAAATTCCCAGTGTGCACACCTGCCCATCCACAGTTTTTAATTAAATTAATTAATTAAATTTAATTAATTAAAGCACATCAGGAAGCAAAAATGGGTCCAAGAAATTAATCATCATCTTGATCCTTAGCAAGAAAGGCACATCAGCTAGTACTAGTCTGGCCGCCATTGTTCCTACTCCTTGACCTCAAAATCTTTCACCCAATTATCAAGAGTGTGACTTTCCGAACTTTAAATTGTTCCCCCAAATTTTCTATGTCACAGCCACTAACAAAAACATCTTAACCTAACTTTACTAATAATCTACATTTCTAAATTTTTTCTTTTAGAGTTATTTATTAATCATATATGAGTACACTGTATCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCACCTCTCCAGCCCTAGATTGTTTGTAAGGTGGTGGTTGAGTCATTAATCTGCTCCAGCAGCAATGCTTGGAAAAGATAATTGCTGTTATTGAAAGTCCAATGACACTGCCCAGTGAGGAGCTGGAGAGACCCACAGAGTTTTTGTACAACTCATAGATCATGACCGGGACGGAAACAACCAGAGCAAAACCTCACAGCAGCATGGAGTCCTCAGGACACATGGTTCTTGGGGTTGTGCCCTCTGAGGCACCCATGGTGATTGGGCTAACTGGTGGGCTGCATTCCATGAGTTCTTGCATGGCCCCCTGCAATCTAGCAACTCTATGGAGCACTTACCCCACAAACACCAGGAACTCCATCTGCCCTGGATGCTTTGGAGATGACTCTGGTGCACCTTATCCTCAAGGATTGTGTTGTCCACTGGGAAGCCTCGTAGTTGAGGGAGAGGTAGAAGGTGTTAAGTTGAGACAGTGGGAACTCTTTAGAGGGCGTTCCCCTGGAGCTAGGCCTGGGAAGAGGGTGAAGTGTTTGGATTGGGATGGGGGCAGATGGGAGTGGGATGTGAGACTTCTAGAAGAACCATCGTGGATAAAGCCCCAGGAGTAGGGAAGTGTGGTCTGATTTAACCGGAGCAAAGCCTGGGAAGGAAGCTGTGATCAAGGCCAATGACTATAACACTAGCTCAGGGAACTGCTTGGCGCTGAGTGGGAGCTGCACACCAGACTGTACATGGAACCATTCTTGCTTGAACAGAGCTGTAATGGAATTCTGTTGGCTTAACATAAAAGCACACACATGCGTGTGTCAGTGTAGGGGATTTCATGCTCCACCAGACCCATCCCTGAGCCACATGCTACACATGGGGCTGGTGCATAACCAAACACATCTTTGGGGCTCTGTGGACTGCCTTGCCCACCTGCTATTTGAGAAGTGTGTGTCACCAGTGAGCCAAGCTCTAGGGTGGCACCCATGCTGTTGAGAACTTGCCCAGTCTTAGGGACGATTAATATCTTCAAGATTGGCCTCAGGATGCCCGTCCCATCCACTACTCCCAGAGAACAGATACAGAGGTCCAATTCCTCTTCAGTCTTCCCATCCTCTGCCTCTTACCCCTATCCTTCAACATCCCAG
Seq C2 exon
TGCGGCTTCTTCCGTCGGAACAGTCCAAGTTCATCATTTCCAACCAACTATCACCGAGCCCATCTGGCCGTGCAGCCCTCGGCCATGGAGGCTGGGGGCCCAGGGACTGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905:ENSRNOT00000030453:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.026
Domain overlap (PFAM):
C1:
PF0035715=Integrin_alpha=PU(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]