RnoINT0076089 @ rn6
Intron Retention
Gene
ENSRNOG00000007905 | Itga7
Description
integrin subunit alpha 7 [Source:RGD Symbol;Acc:71022]
Coordinates
chr7:3382253-3384675:+
Coord C1 exon
chr7:3382253-3382365
Coord A exon
chr7:3382366-3383219
Coord C2 exon
chr7:3383220-3384675
Length
854 bp
Sequences
Splice sites
5' ss Seq
GGGGTAACT
5' ss Score
4.69
3' ss Seq
CTGGCTTGGTGTCCTTATAGCTG
3' ss Score
7.51
Exon sequences
Seq C1 exon
TGCGGCTTCTTCCGTCGGAACAGTCCAAGTTCATCATTTCCAACCAACTATCACCGAGCCCATCTGGCCGTGCAGCCCTCGGCCATGGAGGCTGGGGGCCCAGGGACTGTGGG
Seq A exon
GTAACTGTTGTGTGTGCACGCGTGTATGCAAACGGGTGCATATCTATGTGCTTATATGTGTGAGTCTATGTACAGATCCCAGAATTTGGGTGTGGGGGTCGTGAATGTGCAGGGGGTATGTGTCAGGAATGTGCAGGGTAAGAAGGGAAGTGTGCACAAGGGAGGTGAGGGTCCTAGTGTCCGAGGTAAGGAGTAATTAGAAAGGTGAGGTTCTAAGTGTGAGCATACGTAGCCTGGCATGCACAGACGGTGGGTAGGCTAAGAGTGTGAGCATGTGGGCAGGTGGGGTGGTTCCATGCATGTCTTTTCTGTGGGAACAGTGTGCAGAGATGATTGTGCAGTCTGAGCATGCAGGAGGAGTCTTGTCTATTCTAAGTTTTAGTATGCAAGGGGTCTAACACCATCTTGGTAGGTGAGGGGTTAAACTACCCTGGCCAAGGGGATGCATAGAAGGCCACAGGTGTATGCATATGAGGTTGGAGGGGCAGGAGGTCTAGAAGGTTATTTATCCCTTGGATCTTGTATCCTAGGAGACACTCCTGAGGTTTCTAAAGAAGTTTGAGTAAGAGAGGAAGGCTTGGAAAGTCCTGATGTTCAGTTTCAAGCCTCTCTTTCAGGGACCAAGGGAGACTTCCTTGGTTTGCTCCTTGGGTTTCCTGGTTTTCCTCCCGCTGTGTGAGAACCTTGGACCCCAGTACTGATGGTAGCAAGCTGGGGACTGCCCAGTGTGCTGGAAACTGACCAGCCTACTTTGCATTTGCTTTGGCTGGTTCTTTCTAGCCCAGGGATGGTGAGGGGCTTCAAGGGGCCTCAGTTCTGCAGTCTCCTCATGGTCTGGCTTGGTGTCCTTATAG
Seq C2 exon
CTGGGATTCTTCAAGCGGGCGAAGCACCCTGAGGCCACTGTACCCCAGTACCACGCAGTGAAGATCCTTCGGGAAGACCGGCAGCAGTTCAAGGAGGAGAAGACAGGCACCATTCAGAGGAGTAACTGGGGCAATTCCCAGTGGGAGGGCTCCGACGCACACCCTATCCTGGCTGCCGACTGGCACCCTGAGTTGGGTCCTGATGGACATCCTGTGTCAGTCACTGCCTAACTTCTCCTGTCCCAAGCCCAGCCTCTGGGTTCCTTCCACCCTTTCCCAAGATGGCTCTTTGGGGGTGGAGATAGTGGAGTAGGTTGCTGGCTTCATGTTGAAATAAGGCAGGTTCTGCTTTCTCAGGGGCACAGATCTTTCCCACCGTGAGAACCACCCCTTCCCATCTTCTCCGTACAATGCTGTGAGACACGGGGCATGGCTGGAAGGACAGGCATGACCTGGTGCAGGATGGAGAAGAAGGGGTACTGAGCTGCCTCTCTCACCCACCCTGTAAGACCGTCTTCCCCAAAGTGCCTTAGACAGAGGGTCAGGGAAGAGATCGTGTCACTGTCTCAGGGGCCCTTCCCTCCTAAGTCTTTCCTGTGCTCTGGCCTTAGTGTGCTGTACCAGCCCAGCGGATCTTGTCTATTTATTAAAAAGTATTTGACAATAAGAACTCTGGCTGCTTTATTGAGTGCTGCTCTCATTCTGACGTTTGTCTGCTCTCTGTTCCTCTGTAGTTCAGGATAGAGTGTATGGTGGGGAGGGAGGCTGAGGTGGCCAAGCAAGGGATACATGCCAAGGGGGCACCAGGGAGAACGTTACAATGCTGTGAGACACGGGGCATGGCTGGAAGGACACACAAGGGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGAATAAATGAATGAATAGGGGTCCTAGAAGGGTTGGGTTGGGTAAGTCCAGGGCCTTGCAGTCTAGTTTTCTGCCTCAAGAGAGCAGGAAGAAAGCCTCACTGTGGAGAAAGGCTGAAGCTGATTAATGATCACCCCGGCCGTGGCAGCGGTGCTGAGAGTCTCTGCTTTACCTGACCCCTCCTTAGAAGTACTGGGGTGGCTTCTGGCTGCAGATGGGGAGATCAGATGGCCTTCTTGGGGGAGAGTTATTTCACAGCTTTCCCCATGATGTGGGGCCCAACAGGTAACCACTTGAAGGGAGGGGGCTGCCATTCCAGTTGGACTTCAGAGAACTGTGCCTTCTCAATGTCTTTCCAGGTCTCTCTGGTGAGGTGGCAGCCATCTCCGATGTGTTTCCAGGTAGGTTCTAAAACTCGCTGCCACAGGAGGGCCTGGCTTCCCTGAGGCTCAGACACATGCTCCCAGAAGAACAGCAGGCCTCCCTGGGAGGGAGGGCGGAAGGAAGGAAGGAAGGAAGGAGTCAAGAACGTTTATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007905:ENSRNOT00000030453:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.103
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0035715=Integrin_alpha=PD(86.7=16.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCAACTATCACCGAGCCC
R:
TCTTGGGAAAGGGTGGAAGGA
Band lengths:
355-1209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]