RnoINT0076436 @ rn6
Intron Retention
Gene
ENSRNOG00000012208 | Itgb7
Description
integrin subunit beta 7 [Source:RGD Symbol;Acc:2929]
Coordinates
chr7:143821750-143822321:-
Coord C1 exon
chr7:143822102-143822321
Coord A exon
chr7:143821956-143822101
Coord C2 exon
chr7:143821750-143821955
Length
146 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GATTGGCATTCACCGGACAGGGA
3' ss Score
3.78
Exon sequences
Seq C1 exon
GCTTTGGCCACTGCCAGTGTGGAGTGTGTCACTGCCATGCCAACCGCACTGGCAGAGCATGTGAGTGCAGTGAGAGTGTGGACAGCTGCGTTAGTCCCGAAGGAGGGCTCTGCAGTGGGCATGGTGACTGCAAATGCAACCGTTGCCAGTGCCTGGATGGCTACTACGGGGCTCTGTGTGACCAGTGCCTAGGCTGCAAGTCACCATGTGAGCAATACAG
Seq A exon
GTGAGGCCTTTCTTTCATCTCAGGATTTGGGGCAGTGAAGCTTGCTGAGAATTCCTGCCTGCCTGTTCTCCTTGAGGGTGTGTGGTAAGGGCTGGTTGGTAACAGCTGCCCAGATGTGAATCCATTGATTGGCATTCACCGGACAG
Seq C2 exon
GGACTGCGCGGAGTGTGGGGCGTTTGGTACGGGTCCCCTGGCAGCCAACTGCAGCGCGGCTTGTGCTGACGTGAATGTGACCTTGGCCTTGGCCCCCAATTTGGATGATGGTTGGTGCAAAGAGAGGACGCTAGACAACCAGCTGTTCTTCTTCCTGGTGGAGAATTCGGCCAGAGGGGTCATACTGAGAGTGAGACCCCAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012208:ENSRNOT00000016642:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=51.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTACGGGGCTCTGTGTGA
R:
TATGACCCCTCTGGCCGAATT
Band lengths:
244-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]