RnoINT0076740 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5687592-5688306:+
Coord C1 exon
chr20:5687592-5687733
Coord A exon
chr20:5687734-5688106
Coord C2 exon
chr20:5688107-5688306
Length
373 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
CCCACTCCTGTGACCCACAGGCA
3' ss Score
8.51
Exon sequences
Seq C1 exon
GTGGTCAGCCTGGCACACAACCTCATCTACTTCGGGTTCTACAGCTTCAGCGAGCTGCTGCGACTCACACGCACGTTGCTGGGCATCATCGACTGCATTCAGGCACCAGCCGCTGTGCTGCAGGCCTATGAGGAGCCTGGCG
Seq A exon
GTGAGGCTTGGCCCTCTCCTCAGGCCCTTCCTGGTACCCCCAGTGCTACCTGTTTCCCGGCCCTGTCTCAGTCCCCCTCCATCCTGGTAGCTCAGGGGTCTGGCTCGGCCTTGAGGAAAGGACAGGGGCTGACAGGCTCCACCCCGGAAGAGGTGGTTATGTAAATTGTGCTGGGGTCTGGCTGCTTCCCAGAGGATTTGCTCATCTCCCCACACTCCCTGCTTGCTTTGCCTTCCCCAGTTGGCATCAAGTTCATCTCCCCCTGCAGACCTGCCTGGGTTAGCCCTGTCCCTTCTTAGCGGTTGCCTCACGGGGTTGGAGATTGGGAACCCCTGCCGCGCACCACCTGATGACCCACTCCTGTGACCCACAG
Seq C2 exon
GCAAGAACGTGCGGAGGTCCATCCAGGGGGTGGGACACATGATGTCCACCATGGTGCTAAGCCGCAAGCAGTCTGTATTTGGTGCCTCCAGCCTGCCTACTGGAGTGGGTGTCCCCGAGCAGCTGGACAGAAGCAAATTTGAGGACAATGAACACACCGTGGTGATGGAGACCAAGCTGAAGATCCTGGAGATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.045
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTCAGCCTGGCACAC
R:
TCTCCAGGATCTTCAGCTTGGT
Band lengths:
334-707
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]