RnoINT0077733 @ rn6
Intron Retention
Gene
ENSRNOG00000009872 | Kcnh2
Description
potassium voltage-gated channel subfamily H member 2 [Source:RGD Symbol;Acc:621414]
Coordinates
chr4:7381097-7382025:+
Coord C1 exon
chr4:7381097-7381484
Coord A exon
chr4:7381485-7381825
Coord C2 exon
chr4:7381826-7382025
Length
341 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
CCACTCACCCACGCCCCCAGCCC
3' ss Score
4.93
Exon sequences
Seq C1 exon
CTCATCGGACTGCTGAAAACTGCCAGGCTGCTGCGGCTGGTGCGAGTGGCTCGGAAGCTGGACCGCTACTCGGAGTATGGGGCAGCAGTGCTCTTCCTGCTCATGTGCACCTTCGCGCTCATTGCACACTGGTTGGCCTGCATCTGGTACGCCATCGGCAACATGGAACAGCCTCACATGGACTCACACATTGGCTGGCTGCACAACTTGGGCGACCAGATCGGCAAGCCCTACAACAGCAGCGGCCTGGGAGGCCCCTCCATCAAGGACAAGTACGTCACAGCGCTCTACTTCACCTTCAGCAGCCTCACCAGCGTGGGCTTTGGCAATGTCTCTCCCAACACCAACTCAGAAAAGATCTTCTCCATCTGTGTCATGCTCATTGGCT
Seq A exon
GTGAGTGCGTCCTGGAGGCGGGTGAGGGGTGGAGCCATGGCTGGATAGAAATGGCAGTGAAAGCCCTAGATTGGAGCAAAGTGGCAGTCATACCTCCCTGCCCCGCCCCCTGCTCTTCCCCTCCCAGAGTCCTGGGCTCACAGTATAGTTTGGAGGCTGGGACACCAGGGCAGGAAATGCTGAAGGTTGGCGTGTGTTTGAGCATGTGTATGTCCACTCTCAGACTGAGTCGTGACCGGACCGCGAGTGTCGTTGACCTGGTGCGGGGCCTGAGCAGAGGGTCCCCGTGGGCGGGCGGGGTCCCTGCGGATGCTGACGGCCCCACTCACCCACGCCCCCAG
Seq C2 exon
CCCTCATGTATGCCAGCATCTTCGGCAACGTGTCCGCCATCATCCAGCGGCTGTACTCGGGCACGGCCCGCTACCACACACAGATGCTCCGGGTGCGGGAGTTTATCCGCTTCCATCAGATTCCCAACCCGCTACGCCAGCGCCTCGAGGAGTACTTCCAGCACGCTTGGTCCTACACCAACGGCATCGACATGAATGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009872:ENSRNOT00000013800:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(62.6=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.9=14.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGCTCATGTGCACCTT
R:
GAGTACAGCCGCTGGATGATG
Band lengths:
354-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]