RnoINT0077745 @ rn6
Intron Retention
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140896184-140896976:+
Coord C1 exon
chr7:140896184-140896427
Coord A exon
chr7:140896428-140896818
Coord C2 exon
chr7:140896819-140896976
Length
391 bp
Sequences
Splice sites
5' ss Seq
TAGGTATGT
5' ss Score
7.76
3' ss Seq
CTGCCTATTTTCCCACACAGATA
3' ss Score
9.46
Exon sequences
Seq C1 exon
GGTGTGTTTGGAGAGAAGCCAAATTTGCCCGAATATAAAGTCGCTGCTATCCGGAAGTCACCCTTTATCCTGCTGCACTGTGGGGCTCTGAGAGCCACCTGGGATGGCTTCATCCTGCTCGCCACGCTCTACGTGGCTGTCACTGTGCCATACAGCGTGTGTGTGAGCACAGCACGGGAGCCCAGTGCTGCCCGTGGCCCACCTAGTGTCTGTGACCTGGCCGTGGAAGTCCTCTTCATCTTAG
Seq A exon
GTATGTGGTAAGGTCTGCGCCTGCTGCTCGCTCCGCTTGGGGCCAGGCCCCCACGGGCTTTCGTAAGGATGATTCTTTGCATGGTTTCCATTGCCCTGCAAGTTTCTCCCTTGTTCTTTCGTGGTTTGTCACCCCAGGGGTTTTCAAATCAAGCCTGGATCCTAAAGGTGTCTCTGCCAATAAAGTGTTCTAGAGCCCCGAGCTGAGAAGAGCCTCAGCGAGCCTCAGTTTCTCCCTCTGTAAAATGGGTATAACTGTGTGCATGCTAGAGTTACTGGGCTTAGTCAGGCCACAGGTGTGAAAGGCCTGGGGGCAGGATCAGGCGTTGGACAGGTAGGTAGGTGTGGAGCTGTCCCCTCCCCTGTTGCTGACTGCCTATTTTCCCACACAG
Seq C2 exon
ATATTGTGCTGAATTTTCGTACTACATTTGTGTCCAAGTCAGGCCAGGTGGTATTCGCCCCAAAGTCCATTTGCCTCCACTACGTCACCACCTGGTTCCTGCTGGATGTCATAGCAGCACTGCCCTTTGACCTACTACATGCCTTCAAGGTCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315:ENSRNOT00000086611:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.0=14.6)
A:
NA
C2:
PF0052026=Ion_trans=FE(21.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAAGCCAAATTTGCCCGA
R:
GCTGCTATGACATCCAGCAGG
Band lengths:
351-742
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]