RnoINT0077749 @ rn6
Intron Retention
Gene
ENSRNOG00000057315 | Kcnh3
Description
potassium voltage-gated channel subfamily H member 3 [Source:RGD Symbol;Acc:71070]
Coordinates
chr7:140900835-140901713:+
Coord C1 exon
chr7:140900835-140901034
Coord A exon
chr7:140901035-140901463
Coord C2 exon
chr7:140901464-140901713
Length
429 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGG
5' ss Score
4.48
3' ss Seq
CCCTTACTGCCTGCTTGCAGCTG
3' ss Score
10.12
Exon sequences
Seq C1 exon
CTCTGATGCATGCAGTGGTGTTTGGGAATGTGACAGCCATCATCCAGCGCATGTACGCTCGCCGCTTTCTGTACCACAGCCGCACCCGTGACCTGCGAGACTACATTCGCATCCACCGCATCCCCAAGCCCCTCAAGCAGCGCATGCTCGAGTACTTCCAAGCCACCTGGGCCGTGAACAACGGCATCGATACCACTGAG
Seq A exon
GTGTGGTGGCCTCCTAGGCTGCTTCTAGACTTTCACCTCCTCAAGGGGTTTGTGCTTGGCCTCAACGATCAGGAGTGGAGCTGTGGGTGGGTAGGAAATGCAGAAATATGGTTTCTCTGGTTCTTCTGCAAAGACAGCACACCCCTCCCCCCCCCCCCGTACACGAGACAGAGCAGAATTCTAGTTGGGTCTGTGAGCTCCGTGTGCATTCACTGATGTCAGAGTCTGAGGCCAGGAGGAGGAAAGGGGCTAGGAGGGGCTGCAAAGAGTTTTCTTCCATTCACTGTACCCTCTGCACCTTATGGTGGGTGGGAGGCTTGGACCTCCTCCCATTCCCCCTCTTGCTTCTGAGGTTGGAAATAGCCAGGGGCTGACTGGAAGGGACCTCCTCTTCTGCCACCCCAACTGTCCCTTACTGCCTGCTTGCAG
Seq C2 exon
CTGCTGCAGAGCCTTCCGGATGAGCTTCGAGCAGACATCGCCATGCACCTGCACAAGGAGGTCCTGCAGCTGCCATTGTTCGAGGCAGCGAGCCGTGGCTGCCTGCGGGCACTGTCTCTGGCCCTGAGGCCCGCCTTCTGCACGCCGGGCGAGTACCTCATTCACCAAGGCGATGCTCTCCAGGCTCTCTACTTTGTGTGCTCAGGTTCCATGGAGGTCCTCAAAGGTGGCACCGTCCTCGCCATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057315:ENSRNOT00000086611:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.1=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGACAGCCATCATCCAGC
R:
GAGCATCGCCTTGGTGAATGA
Band lengths:
351-780
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]