RnoINT0077761 @ rn6
Intron Retention
Gene
ENSRNOG00000018790 | Kcnh4
Description
potassium voltage-gated channel subfamily H member 4 [Source:RGD Symbol;Acc:621415]
Coordinates
chr10:88662804-88663642:-
Coord C1 exon
chr10:88663399-88663642
Coord A exon
chr10:88662962-88663398
Coord C2 exon
chr10:88662804-88662961
Length
437 bp
Sequences
Splice sites
5' ss Seq
TGGGTCAGA
5' ss Score
1.91
3' ss Seq
CAGCCTCTTGCATTCCTCAGACA
3' ss Score
6.28
Exon sequences
Seq C1 exon
AACGTGTTTGAGCCAAAGCCATCAGTGCCTGAGTACAAAGTGGCCTCCGTGGGGGGCTCCCGCTGCCTGCTCCTCCACTACAGCATCCCCAAGGCTGTCTGGGACGGTCTCATCCTTCTCGCTACGTTCTACGTCGCGGTCACCGTCCCTTACAACGTCTGCTTCGCTGGTGATGACGACACCCCCATCACGTCCCGACACACCCTTGTCAGTGACATCGCTGTGGAGATGCTCTTCATCCTGG
Seq A exon
GTCAGACCCTCTGCTGTACTAACCTGGAGGGCGGGCTGTGGGGACCCACAACCCTCCGCTGCACTAATCTGGAGGGCGGGCTGTGGGGACCCACTCTGGCAAGCCTCTTCCAGCCTAGGTCTGCTGGGCCCTTCCTTAGCTTAAAGAGTCTTTGTAGTTCTGAGTTCTAGGGGCCTAGTGAGGGGTGAGTATGCCTTCAGAGTGGGAGGAGGCTTACCCCCTAGGACCCCATAAATCCCATAGTGCCCAGTACCCTGCAACCTTCCGCCATGTGGCATTTCCTTCCTATAGATCATCCAAGAGTCTCAGCTTTCTTCATTCTGCCTCCTCCTTCATTCTGGGCCTCCAATGCTCACTCCTAGCTTGCCCCATTCCTTAGCTACCTGACCTGAGAGTTCAGGCTATGGTCCCTAGTAACAGCCTCTTGCATTCCTCAG
Seq C2 exon
ACATCATCTTGAACTTCCGCACCACCTACGTGTCCCAGTCGGGCCAGGTGGTTTCTGCTCCTCGGTCCATTGGCCTCCACTACCTGGCCACCTGGTTCTTCGTGGACCTCATTGCTGCTTTGCCCTTTGACCTGCTGTATGTCTTCAACATCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018790:ENSRNOT00000025518:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PU(5.7=14.6)
A:
NA
C2:
PF0052026=Ion_trans=FE(24.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAGTACAAAGTGGCCTC
R:
ACAGCAGGTCAAAGGGCAAAG
Band lengths:
356-793
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]