RnoINT0077815 @ rn6
Intron Retention
Gene
ENSRNOG00000058626 | Kcnh8
Description
potassium voltage-gated channel subfamily H member 8 [Source:RGD Symbol;Acc:2549]
Coordinates
chr9:3300737-3302525:-
Coord C1 exon
chr9:3302326-3302525
Coord A exon
chr9:3300987-3302325
Coord C2 exon
chr9:3300737-3300986
Length
1339 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CCTGTCCTCTTTCCCAACAGCTT
3' ss Score
11.98
Exon sequences
Seq C1 exon
CCCTGATGCATGCCTTGGTATTTGGGAATGTGACTGCCATCATACAGAGAATGTACTCTAGATGGAGCCTGTACCATACTAGAACCAAGGACCTAAAGGACTTCATCCGTGTGCATCACCTGCCCCAGCAACTCAAGCAGAGGATGCTTGAGTACTTTCAGACAACTTGGTCTGTCAACAATGGAATAGATTCAAATGAG
Seq A exon
GTAATGTGCATTTCTTATGTTGACATATTCATGCCAAAAGCATAGTTATCCTGTAAAGACAAGATGTCCTAATGCAGATATAAGAGAGGGACACAGTAACCAGCCTCTTTATCTCTTTGTCTTTCATCATTAATCAGCCTACAACCCACATTTCTGTTTTTATTATTATTACTTTTATTTTTTTACATTCTAGTCATTGTCTCCCTCCAGGTTCACCCTCCCACAGTTCCTTATCTCATTCCTCCTCCCCGTCTCCAAGAGGATAACCTGTCCCACCAGACCTCCCCATTCCTTGGGGCCCCAAGTCTCCCAAGGGTTAGGCATGTCTTCTCCCACTGAATGCAGACCAGGCAGTCCTCTCCTACAAATGTGTCCGGGCCTCAGATCAGCTTGTATACACTGCCTGGTTGTCAACCCACCTTTCTTTATACATCACAACTGATGTTTTCACAGTGACACTCTATGATGACAGAGTTTCATAGCAATTTGCTATGATTTTCATTAGGATTCATCCTTATGGCAATTTAGTGTCATAATGTTGGGTGAATACTCAATGTAAACCTGCCCCATTGATCCATAGTTTTTAAAAAAAGAAACAAAATACGGGCAAAATGATATCTGTAGAATTCAAGAAATAGCCCCAAGTAACCACTGTGCAAGACACTGATTGTATAGATCAACCAACCAGTCCACCAACACATCAAACAATCCAGTAACCAAGTAACAACTATTCTTTGAGTTAACTTATAAAATAAGGCAAGTTTTAGATGTTCTGTATTTTTATTCTTCATCCTGCACTGTGCTCTCCAAACTCCTCAATGGAATTTTATTCACCATGAAGAAAAATAAAATCACGATCTTTGGGGGGCAAGACTGGATAGAACTAGAGGTCAATACATTAAGTGAGAAAAAACAAGACTCTGTGTGACAAATTCCTTGTTTTTCTCTCATATTCAAAACCTAGGAACCAGCATTTTAAGAGTGGGATTACCTCTGTATATAGCATTACACAGTAAGAAAGGACAGTGTGTTCACGTTCCTCTATCTACCCCAGTAGGAGTCTTGACAGAAGTGTTGCAAGCTTTTCTACCAGAATATGTTAGAAACTTTAAAACTCGCTTCAGATTTATCATCAGCTGATTATTCCATGGCACATAACTGAAGTTGCAGTCAGTACATAGCCCTGGAGACTGTACAGAGGAAATCTCAGAAGGTATAACAATCCATTACTGTATAATGCAGTTCACTCAAGTAGGACGAGTGCCACTGACATCTTGCAAACTCATTGAGTAGACTCAGCTCATCCCAACTTCCTTTCTCCTGTCCTCTTTCCCAACAG
Seq C2 exon
CTTTTGAAAGACTTTCCAGATGAGCTGCGCTCTGACATCACGATGCATCTGAACAAGGAGATCTTACAGCTGTCCCTGTTTGAATGTGCTAGCCGGGGCTGCCTCAGGTCTCTGTCTCTCCATATTAAAACCTCATTCTGTGCCCCAGGAGAGTATCTGCTGCGCCAGGGAGATGCGTTGCAGGCCATCTACTTCGTGTGCTCAGGCTCTATGGAGGTTCTTAAAGACAGCATGGTGTTGGCTATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058626:ENSRNOT00000087331:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.7=14.9)
A:
NA
C2:
PF0002724=cNMP_binding=PU(45.5=47.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCATCCGTGTGCATCACC
R:
AGCCAACACCATGCTGTCTTT
Band lengths:
344-1683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]