RnoINT0077856 @ rn6
Intron Retention
Gene
ENSRNOG00000007645 | Kcnj9
Description
potassium voltage-gated channel subfamily J member 9 [Source:RGD Symbol;Acc:621440]
Coordinates
chr13:90708883-90710148:-
Coord C1 exon
chr13:90710035-90710148
Coord A exon
chr13:90708984-90710034
Coord C2 exon
chr13:90708883-90708983
Length
1051 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
ATATGGTTCGTCTCTCTTAGGGG
3' ss Score
8.09
Exon sequences
Seq C1 exon
GTCTGCGGCTCCCACTCTCAGAGGGGACCTAGGGTATTGGGGGAGATGGTGTCAGGGACATGGACTCCAACCCCCAAGGGTCTCTGCTGCTGGCTACTCTCCTCTTCAGGCTCT
Seq A exon
GTGAGTTGAGTTGTGGGACTTGGGGTTTGGGCCCCTATTTCTAAGCCAAGAGGGGTTTGGGTGGAGCTGGCTCCTGAGGGAGTTTTCACCAGACAGACCTCTTTCCAAAAGATAAGCCCCCCTCTCCCCACCCCCACCCCGTACTGGCCAGCACTCTCTAGAGGTAGGAAGAGCTCGCCAAGAAAATGTGGTGCTGGGATCTTACTGAAAGGGGTCACAGCATGCCTAGGAACTGTGGTCTGAAGAGCTGGAGTTCTTTGGAGGGAAGAGGCAGAAATGAAGATGTTGCTCTTCAGGTGGTGGACACTGCACATCTTCCCTGCCCTGTGAAGACGAGGCCGTTCCTCAGGACGGCAAGAGCTAGGGTGCAGTCAGAAGGCTCTCTGGGCAGTCGGTGTTCAGGGGGTGATCAGACACTGGGAGTCCTTCCCCATTCCTGGGCACAGATGGAGGTCAGATTACCAAAGACCTTAAGAAGGACATCTAGAAGCCCACTGAAGCTAATGTTAGGCTGAAAGAGACCTGGGGTCTTAAGGCACTGAAAACTTACAGATCACTTGCTGAGGACGCCCTGGGCTACAGAGAGGGAAAAGCAAGCCTGCTGTTGGGGGAGGGGAAGATCTTAATCTGCCATTGCCAGAGTGTCCCTGGGCTGTGTCTCTTGACTTCCATGAAAAAAATAAGTGTGTGGGGTCTCCTTAGGATACAAACCATCTTTTCGTGGTTCCTCCTTCTACCTTTATTTAACGTACACACACCCTCCAAAGGTCTGGCTGTGGAACACTTGGCTCCAAAATTTAAAAATTGGAATGTCGGATCTGTGGTTACACATCCACACAGTTTCTCCCTAGGATCTGGTCCAAACATCCAAACCATCTGAGATCTCTGTGTCATATCTCTGCCCCCACAGGGCCTCCTGCCCCCCCCAGCTCTCCTGCCCCACCCCTCACCCCGAATGAGTGATGACAAATCCCAGGAAAGAGAAGGGAAGGTTGATGAGTCTTAAATCCTCGTTCTACAGACTTCTGTTCATATGGTTCGTCTCTCTTAG
Seq C2 exon
GGGGCCGTGAGAGCCTAGGGAAGGACCCTGGACATCCCGTCTCTCCGGGAAGATTTTAACACAGAGTGCTTCTCAGGGGGAAGAATTCGAAGCAAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007645:ENSRNOT00000010113:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGCGGCTCCCACTCTC
R:
CTGGTTTTGCTTCGAATTCTTCCC
Band lengths:
214-1265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]