RnoINT0080216 @ rn6
Intron Retention
Gene
ENSRNOG00000014118 | Klkb1
Description
kallikrein B1 [Source:RGD Symbol;Acc:67382]
Coordinates
chr16:50168469-50169212:+
Coord C1 exon
chr16:50168469-50168581
Coord A exon
chr16:50168582-50169043
Coord C2 exon
chr16:50169044-50169212
Length
462 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CACATCTCAACACTTTTCAGACT
3' ss Score
5.47
Exon sequences
Seq C1 exon
GTGTAAATGTTCCTTAAGGTTATCCACGGATGGCTCTCCAACTAGGATCACCTATGAGGCACAGGGGAGCTCTGGTTATTCTCTGAGACTGTGTAAAGTTGTGGAGAGCTCTG
Seq A exon
GTGAGTGAAGCTCACTTGTTATGGAACTGCATGGCTGGCTTGACTGCTGTGATGAATGTCTTGGTCTTATATAATGGGATTGTTTATATGGTTTCTGTTATGGTTTGTATGTGCTTGGCCCAGGGTGTGGCCCTGTTGGAGTAACTTGTTGGAGTGGGTGTGTCACTGTGGGTATGGGCTATAAGACCCTCATGCTAGCTGCCTGGAAGTCAGTATTCTGCTAGCAGCCTTCAGATGAAGGCACCATGCATGCCTGGATGCCGCCATGTTCCCATCTTGGCGATAATGGACTGAACCTTTAAACCTCTAAACCAGCTCCAATTAAATGTTGTCTTTATAAGAGTTGCCTTGGTCATGGTGTCTGTTCGCACAGTAAAAACCCTAACTAAGACAGTTTCCTTGGATAAAGGGAGGGAATGCTGATCTGTGTCTAATTCTGCCACACATCTCAACACTTTTCAG
Seq C2 exon
ACTGTACGACAAAAATAAATGCACGTATTGTGGGAGGAACAAACTCTTCTTTAGGAGAGTGGCCATGGCAGGTCAGCCTGCAAGTAAAGTTGGTTTCTCAGAATCATATGTGTGGAGGGTCCATCATTGGACGCCAATGGATACTGACGGCTGCCCATTGCTTTGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014118:ENSRNOT00000019237:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(36.9=79.5)
A:
NA
C2:
PF0008921=Trypsin=PU(20.3=82.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATGTTCCTTAAGGTTATCCACGG
R:
CAATGGGCAGCCGTCAGTATC
Band lengths:
270-732
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]