RnoINT0080254 @ rn6
Intron Retention
Gene
ENSRNOG00000057410 | Klrb1
Description
killer cell lectin-like receptor subfamily B, member 1 [Source:RGD Symbol;Acc:1587563]
Coordinates
chr4:162789151-162789893:+
Coord C1 exon
chr4:162789151-162789225
Coord A exon
chr4:162789226-162789738
Coord C2 exon
chr4:162789739-162789893
Length
513 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CTTTTTTTTTTCTTCTCTAGTGA
3' ss Score
10.6
Exon sequences
Seq C1 exon
TGGGATTCTTGGTGCAAAAACCACCAATAGAAAAATGCAGTGTGGCTGTTCAAGAGAACAAGACTGAACCAACAG
Seq A exon
GTAATTGTGTGGCTTGAGTTTCCTGAGAATAATAGATAACAGAAAATGTGAATTACTTCAATCAAAGTTCATAGCAGCTCTCCATGAACATACTATATCACCATGGTTTTGTTTAAGAAGACAGCCACAACATTAAGAATTCTTGGAGAGTCGCACAGATTGTAACTGTTGATGTTCAAGACTCAGCTGAAGCTGTGTGACTTTGACATCTATGAGCCTTAGACTATGCTGTCTCAGGCTGCTGATGCACATAATCCCTAAAGGGCAGAGTTCAAGTTAAAAAGTACTGTAGTTGATTGTTTTCATGAATGTGTTGCACAGTGTACTTTGTCTGAAGTTAATTAATAAAAGCAAAACAAAAAGCAATCCTTTACATTAATTATGGTGATCTGACCTATAACCACATTGATTATGTTGCAATATGCACTAATGAAGAACCTACTGTGTGTAGTTTATTATGGTACATCAAGAACAGGGCAGAAATAGATCATGTCTTTTTTTTTTCTTCTCTAG
Seq C2 exon
TGAGATCAACCATTCTAGAGTGCCCAAGAGATTGGCATTTGCACTGGAATAAATGCTTATTTATTTCTCAAACTTCCAGACCTTGGGCTGAAGGTCTCGCTGACTGTTCTTTGAGAGGAGCCACTTTGCTGCTCATTGGAGATGGAAAAGAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057410:ENSRNOT00000084289:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF149271=Neurensin=FE(19.8=100)
A:
NA
C2:
PF149271=Neurensin=PD(38.1=92.3),PF0005916=Lectin_C=PU(26.5=51.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATTCTTGGTGCAAAAACC
R:
CAATTCTTTTCCATCTCCAATGAGCA
Band lengths:
230-743
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]