RnoINT0080284 @ rn6
Intron Retention
Gene
ENSRNOG00000058714 | Klre1
Description
killer cell lectin-like receptor, family E, member 1 [Source:RGD Symbol;Acc:727903]
Coordinates
chr4:163353833-163354976:+
Coord C1 exon
chr4:163353833-163353933
Coord A exon
chr4:163353934-163354809
Coord C2 exon
chr4:163354810-163354976
Length
876 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TGGAATTTCTTTCGTTTTAGGTT
3' ss Score
11.04
Exon sequences
Seq C1 exon
GATTTCTTCTCTTTGAAGTCTTTCTTTTGGGTTGGAGTTTACTACGATGAAACCAGCAAACAGTGGCTGTGGGACGACCATTCAGTTCTACCCAGTGGGAT
Seq A exon
GTAAGTAGTCACATGGCATCACGTGTTTAGAAAGCAGTCCCCAGACAGATGAAGATTATCCTCACACAATTGTCTTGATACCCTCTTTCCTGGTTTAGATCTACCAACTATCAGTTTCAATAGTCTCTTTCACCCCCACCTCCTCACCCCACCCCAGGAAGGAGCTTTCTTAGCCACCTACTTAGGAAAGGATGGCTTTGCTAGCAACTCCTTTTTATTTGTCTGAGGACAAGTAAACACATCTTTATTTAGCATACATTCCTTTAATTCTAGGGTTCAGGAGCAACCTCCTTAGTTCAGTGTTCTGTCTTTTGGCCTGTCAAGCCAATGACTGCATTATGTAAGATCTAACATCGATTGCAATATGTCATTAATATCCTCCTGGTCTTTAATATTGCATTTGTCATGAGACCAAACGCTGTGGTGCCTATATGTATATTTAGGGGGAGCTATTCACAGTTGGTTTTGCTCTGTTTTCTTTTTCTTTTTTTACTTTTTTACTGTGGCATCACGGATCTAAGGTAGGGCCTTGATTGTGTCAATATCATGCTCCTCTACTGAGCCACACCTCTCTGCCCTACTCAGAGTCTTATTTATTTGTTTACTTTTGAATTTGTTTCTCTTTACTTGGACAACCAATTGGCCTTCTTTGTCCTTAGACTCTTTCTTAGTGAAAATATTAATTGATATTTACAATTGCATACTGATTTGATAACTTTATGGTTAACTACCATTTTCCTGTAAGAATTATGGGTTATAGAAATCCTACATTGGATTTTTAACATTTATATGTAGGGTGGGCAATAGTTATGTCTTCTCTTAGGCATTTGAATGCTATAAAATTTTGTGATAACAGTGGAATTTCTTTCGTTTTAG
Seq C2 exon
GTTTTCTGGTCTTGAATCTAGTCCGAAAAACTTCTGTGCATCTTATAAATCAAAAGAAGCCTATTTGGCAGAAAACTGTTCAACCAAACTAATGTACATTTGCAAGAAGTAGCATATATAATCCTATAAGTTCATAAAAGATATGAAAATTAAAGTCTTAATTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058714:ENSRNOT00000084823:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005916=Lectin_C=FE(34.0=100)
A:
NA
C2:
PF0005916=Lectin_C=PD(37.1=94.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTCTTTGAAGTCTTTCTTTTGGG
R:
TATATGCTACTTCTTGCAAATGTACA
Band lengths:
214-1090
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]