RnoINT0081186 @ rn6
Intron Retention
Gene
ENSRNOG00000016097 | Kyat1
Description
kynurenine aminotransferase 1 [Source:RGD Symbol;Acc:1306912]
Coordinates
chr3:8753503-8753874:-
Coord C1 exon
chr3:8753785-8753874
Coord A exon
chr3:8753690-8753784
Coord C2 exon
chr3:8753503-8753689
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTCCGTCTGTCCTGTCCAGGCT
3' ss Score
9.39
Exon sequences
Seq C1 exon
GTGGGCTGGGTCATGGGTCCAGATAACATCATGAAGCACCTGAGGACAGTGCACCAGAATTCTATCTTCCACTGCCCCACCCAGGCCCAG
Seq A exon
GTGAGAAGGGCAGGAAACCCCATGGTCTGGGAAGGTGGCCAGGAAAGCCCCCAGACAGGTCATAGCTGACCCATCTGTCCGTCTGTCCTGTCCAG
Seq C2 exon
GCTGCAGTAGCCCAGTGCTTTGAGCGGGAGCAGCAACACTTTGGACAACCCAGCAGCTACTTTTTGCAGCTGCCACAGGCCATGGAGCTGAACCGAGACCACATGATCCGTAGCCTGCAGTCAGTGGGCCTCAAGCTCTGGATCTCCCAGGGGAGCTACTTCCTCATTGCAGACATCTCAGACTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016097:ENSRNOT00000021865:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015516=Aminotran_1_2=FE(7.5=100)
A:
NA
C2:
PF0015516=Aminotran_1_2=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATCTTCCACTGCCCCACC
R:
TGGGAGATCCAGAGCTTGAGG
Band lengths:
179-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]