RnoINT0081765 @ rn6
Intron Retention
Gene
ENSRNOG00000051457 | LOC100911649
Description
ral guanine nucleotide dissociation stimulator-like [Source:RGD Symbol;Acc:6491640]
Coordinates
chr16:12741115-12742010:-
Coord C1 exon
chr16:12741438-12742010
Coord A exon
chr16:12741312-12741437
Coord C2 exon
chr16:12741115-12741311
Length
126 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACC
5' ss Score
8.66
3' ss Seq
TGACCTCAATCTTTCCTCAGGGT
3' ss Score
10.3
Exon sequences
Seq C1 exon
GATCTCATTCCACACAGAACACATACAAGTCATGTAAAAGCAAGAAATCATGCCTAGGGTTGATGGTACATTGGGCTAGGTAGGCCAGAGCTTTGATGGGGGTTACAGATGCAGTTCCAAAGGAGGGAATCTGGTTGCAAAGCTGAGATGCTGTTTATATACAGGTATCTCTGGGAGCAGTAGAGTAGAAAACACATGTATACCTGTGTAGACTTGCGAACCTGGGAAGTGGGAAAGAAACTAGGAGCCCTTTAATAAAATGCTGTTAAAGAAGTGACAGTTATAGAATCACCCTCATGGCCATGACCTAACAATGGAAAACCTTAGTAACCAGGCAACCCACTGGTTAGAGCAAGGACTATAAGCTCACTGGTCAGAGACAGTAGAGAGGACAGGATGTTCTCTTTCCGTCTTCGGACTACTCGAGGTTCGGGCCTCAAGAAAGACAACAGAGAAGGCCATGAAGGTGTCTGGAGGCACAGGGTTCGCTCTTGCCTTCAACGCCTGTGGCCATTTTCCCAAAGGGGGAAAAATTTGACCAAAGCAAGCCAAGGACAGGACCACACAGACCAG
Seq A exon
GTAACCATTCTTTTGTCTCTGGGTTTTTGGCATAGAAATAATTCAGGAAAACTTGGAATGAGGAGAACCACTCAGAATGTTGCAGATCTGTGCCCTTTCGAAACTTTGACCTCAATCTTTCCTCAG
Seq C2 exon
GGTAAGAACTCTTCTGACACACAGGACATGAGAAAGCCCTGTAGAGACTCAGACATCAGTTCAGGGACTGTGGTTAAGCTGGTGAACAACTTGGTGCCTTCTCTGCAGAAAGGGGACCCCAGCTTTGTCCCTGCCTTTCTGTCCACATACCGAAGATTTGCCACCACCCTACAGGTATTGGATCTGCTATTCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051457:ENSRNOT00000077513:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061815=RasGEF_N=PU(48.5=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTCGGACTACTCGAGGT
R:
ACCAGCTTAACCACAGTCCCT
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]