RnoINT0082154 @ rn6
Intron Retention
Gene
ENSRNOG00000023431 | LOC102555635
Description
zinc finger protein 39-like [Source:RGD Symbol;Acc:7511312]
Coordinates
chr10:45193989-45195825:+
Coord C1 exon
chr10:45193989-45194082
Coord A exon
chr10:45194083-45195609
Coord C2 exon
chr10:45195610-45195825
Length
1527 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
AATTGCGTTCTTCCCATTAGATC
3' ss Score
8.43
Exon sequences
Seq C1 exon
ATCTTGCTTCCGGTTTCCGAGGGGGTTGGATTGTGTTCTCAGCCCTACGCCAGCCTGTCGGGACATCTATGTGTAGTCAGACAGCTGCCTTCTG
Seq A exon
GTGAGTACAGCCGGTTTCTGCCTGCAGGGGCGGTCGCTGTGCGGTGTGCAGATGGTGCGATCCAGGGCGCTCTGTGCGGGGCTGAGTTCACAGCCTCTGTCGCCCTCGGTCCCGATGTGGCTGAGCCGATCCTCCTTGATGCAGCAAGGAGACTTGTCTTCAGTCGTATCTTGTCTCCTCCTAGTCCTGACCCTGGTACCACAACTACTGTGTCTAGTGTCCCGTTGTCTGGCAGTGACAGTCCTAGATCCTAGAGCAGCCTGACGTGTGGGGTGAACCTGTGCTGGGGCATCTCCTGGCCTCTCTCCCTTATCTGGAAGGCTCTTATGTGTCTTGGCTTCTGTGGAGAGTGCTCGGTAATAGCACAGACTTTTTACTGCAGGAAGAACAAATGTCCGTTCGCCTCAGGTGGGCACTTAGGAATTACCAAAGTAAGGACTCCGCCACGGTCCAGCCTGGCGAACCAGAGAGGATGGATGACACCCCCCATCCCCCAGACCACCAAGTCCCATCCCAGTATAGACGGTGACCTCATGGAGCCCCACATTCAGTAAACTTTTAATTTCCTGCATGCATATTCTAGCTCACAAGCTATGGGCGGTAATGGTTGGAATCCCAGATAGGGTCTCCTCAACTCCCCTCCTCTCCTACTTTAGGATGTAACAGCTCCACTGCGGCTAGGGTAGAACTGTTTTACTTCATCGTTACGGATTTCTGGTCAGGCTCTGCCCCGAGATGGAGATGGGCAATGATGTTGTGCCCAGAGTTAAAACCATAGTACAATGGCGAGCTATGGAGCGTGCTTTTTTGCACAATGTGATTTCATTACTTGTGGCAACATGCAAACTTCCTGTGATTCCTGGATCCTGTAGTAAATTTAGATGTATGGCCAGGGTCTGGTGACACAGAACTGGTAGCACATAGCCCGCTAGCATGGGAAACCTCATTTGAAAAGGCAGAGCGTGGGGGTTGGGGATTTAGCTCAGTGGTAGAACTCTTGCCTAGGAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGAAAGAAAAGAAAAGGCAGAGAGGAGGGGCATTGTGGGAGGGAGCTCCACAGTCTGTGGACACCACAGGCAGGCTCTCGTTAAACAGTACTTCCAAGGCACTGCTATAAATAGGGGTCACATTCACTTACAGGTACACCCCTGGGCCAAAGGCTTAGGTTGCACTAGGCATTTTGTCCGTGAAACTTACATATGTGAACCAAGTGATGAGGGTGGAGTCCTGTGCAGTACCCCTGCACTGACGGGAAAATAGGAACTCCTGTTCTCTGAAATTTCTGTGGCTGCATACTGTTCATGAGTAACATCTTGTTCATTAAAATCCATTCCTAAAACACCGCAGTGTGTCTTCATGGTAACAGTTACTAAGCAAGCAGCAACTACTTTGACTAACCTCTGGGTAAACTGGAGGTTTAATTTCTAATTAATTGCGTTCTTCCCATTAG
Seq C2 exon
ATCCGCGGTGGTGGCTCTCACCTGTAAGACACTGCTCCCTCACCGGAGGCGTCTTTGTCGTGTTCTGGCTTTTGGCTCAGCAACTATGTAGAGATACTGGAATCCACCAACAAGGCCCAGCAAGGGCCTGTTCACTTCTGTTGCCCGTCTTTCCCTGCCGGCTGCGATTGCAAGGCACTCCGTGTGCCTTAGAGAGCGAGGATGGACACAGTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023431:ENSRNOT00000061005:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCGAGGGGGTTGGATTG
R:
CATGACTGTGTCCATCCTCGC
Band lengths:
298-1825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]