RnoINT0082297 @ rn6
Intron Retention
Gene
ENSRNOG00000060019 | LOC103692984
Description
uncharacterized LOC103692984 [Source:RGD Symbol;Acc:9397727]
Coordinates
chr7:142860559-142861925:-
Coord C1 exon
chr7:142861271-142861925
Coord A exon
chr7:142860728-142861270
Coord C2 exon
chr7:142860559-142860727
Length
543 bp
Sequences
Splice sites
5' ss Seq
ATGGTGCGT
5' ss Score
8.27
3' ss Seq
CAAACCCTTTTTATAAACAGACC
3' ss Score
6.66
Exon sequences
Seq C1 exon
ACACATATGGCTCAGGGGGAAAAACTGCTATGAAACAAAACACCAAGTGATTCACCCTTCAAAATGAGCCCATGGCTTTGGTGACACAGTAACTTTCAAGCATATGTAAAGAGGTGCCAGAATGAATGCTGTTCTGATTTTTAGGTTGGCAAAGCTGGCTCTGCAAACCATGCTGAGACCTAGGATGGGCGAGAGGCCGACCAGTCATAGGATGGTCTGCAGGGTCAGGACTGAGGTCATGCAAACCTCTGAAGAAGGGGTTAGCAGGTCAGACCTATGGTAGTCACCTTGTATCTCAGCCTGGGTAATAACCACAACTCCTAAACTGTGAAGGGCTGAAGTGGTGGGCAGGTTCTACAGTGATGTTGTAGTGAAAATAGAGGTCTTAGAATTGTGTGTTCATGTGCCACAGTCTGTGGACATTTGAGGATGATTCTGTTTCTGTCTCCTATCTCACTGTGCAGACACTTTAACAAACTGAGTCATCCTGAGGGCTTTGCCAATATTAACTGCACAACATGACTGCTCCCTTTCAAACGCTTTTATGGCCTTTATTTAGATGGAAGACCTGCAGAAGGCAGCATGCAGAAGTTGCAAGTCCTTTCTACAACAGCAGTCTACAAATGGAAGCCGTGGGCCTGGATGTTAGCACATG
Seq A exon
GTGCGTGTGAGTTACCTGCAGGGACGTACGTACCCACCCACCCAAACCTACTGTAGCACTTGTTACTCTGGGTGCCCCAGCCCACAGCTACAGCATTTACACCTAGTTTGTTGGAACACGGTCCAAGAATGGAGCCATGGGAGGAGAATTCTGAGTACTTGTGAGAAATATCCAAGAAAATAAGACAAAAGTCTAGTGACCTTACTTCCTTCAAAACTTGCCATGTGTAATTTGTTGATGAGAACTTTACTCCAGTGCCATTTCTCAACTCCCAGAGTATAAATTGTCTGATGCTTTGAATATGGCTGGCTATTGCGTGAGACTTCAGTCTACCTCAGTTTTAGGCTCTGCTCTCCCAGGTCCAACCAGCAGCTAGATCAGTGAACACCTTCCATGTTCTGAAGATCCCTGCTAAACCGTGCAGACTCACCCCCATCTCCTAAGTGCCCAGAACGCAGTCACACTTCAGTCGAGGTGAGGGAGGTTAAACTGCAGAGTGAGTGGCCCGTGACTAACCAGAGATCAAACCCTTTTTATAAACAG
Seq C2 exon
ACCAAAATGCTAAAAGACGACACAAAGCTGGTCTCAGAAGATCTAAATGTCCAGGTCAGCAGTGAAGGAATTCTGCTCAAGTGCAGCACACAGAGGACCCATGCCCCACTCCGGCCACGCCCTGGGCAGTCATTATATATGGGAGGCAGATGGGATCAGAGCAGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060019:ENSRNOT00000077084:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTGGTGGGCAGGTTCTA
R:
CTGAGACCAGCTTTGTGTCGT
Band lengths:
356-899
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]