RnoINT0082452 @ rn6
Intron Retention
Gene
ENSRNOG00000030666 | LOC108348140
Description
H-2 class I histocompatibility antigen, TLA(B) alpha chain-like [Source:RGD Symbol;Acc:11396749]
Coordinates
chr20:3121930-3122458:+
Coord C1 exon
chr20:3121930-3122043
Coord A exon
chr20:3122044-3122398
Coord C2 exon
chr20:3122399-3122458
Length
355 bp
Sequences
Splice sites
5' ss Seq
AGGGTATGG
5' ss Score
7
3' ss Seq
TTTGTTTTTTGTTTTTACAGGAG
3' ss Score
10.56
Exon sequences
Seq C1 exon
AGCCTCCTCAGTCCAGAATGCGGACCAGGGTCATTGTTGGTGCTGTCCTTGGTGCTATGGCCATCTTAGGTTTTATGACTGGAGGTGCTGTGATGTGCATGAGAAAGAACAAGG
Seq A exon
GTATGGAAGAGTCTGTGGCTGGGTTTTGTTCTTTTAGGTCTTTAAGAAGGATGCTTTATGAATATAAATCAAAACACAGACCCCTTATGCACAAGCTTGCCCCTTTCTAGGTCAGTTTGCAGACACTCACCTTACAGTACAAGACAGATTCATAATGGTGATGGTGGTGAGAGGTCTGCACATCATTCTCAAAGGTCAGAGGTCAGAGGTCAGAAGACAAGTCTCATGCTAAACACTACAGATGTCCAGCCTGGCCTTCGATCATTCCCCGAATACGATGTCCAGGGTCCAGAAATCCTTGGTCTCCCACATGTGTTTTTTTTTTGTTTGTTTGTTTTGTTTTTTGTTTTTACAG
Seq C2 exon
GAGGAGACAGAGATTATGATCCTGCTGCCGTCACAATGTGAGGGAACAGTTGTCCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030666:ENSRNOT00000061395:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]