RnoINT0083221 @ rn6
Intron Retention
Gene
ENSRNOG00000039210 | LOC502618
Description
ABO-family member 6 [Source:RGD Symbol;Acc:1560029]
Coordinates
chr3:14605191-14606183:-
Coord C1 exon
chr3:14606100-14606183
Coord A exon
chr3:14605224-14606099
Coord C2 exon
chr3:14605191-14605223
Length
876 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
GCTTTTCTATTTCCCCTAAGTTT
3' ss Score
6.26
Exon sequences
Seq C1 exon
GAAAAGAATGAGATACAAAGTATTAATCCTGTTGCTGTTGGTGTTAATGTCTCTCTATGCCCAGTATAGAGAATACCCTTTCAG
Seq A exon
GTAACTGTGAAAACTTAATACCATCTTCTTGGTAAGAACCTAGCAAGTCAGAAAGTTTAACAGGATTGCCCCTTAAGGAAATCAGCCCAAGGTGCAGATCTAAACATTATATCCATGCCTTGCTCCATAAATAGATCCTTCTGTCCCAATGCTTTGTTTCTAATGATATCAAAGATTTAAAAAAAAATCCTATAGATAGCCAGGTGTGAAGGCACGTGCCTTTCATTCCAGCACTTGGAAGGCAGAGGCAGGCAGATCTCTGAGGCCAGTGGGTTCTATGCAGCTAGGTCCAGGCAGCACAGTCAGGGAGGGCTACACAGAGAATCCCTGTGTCCATTGGGGTTAGGGAGGGCTTTAAGGGAAGGAGTGTGAAACTACCACTTACTGTGGCCACAACAATGTTCATAGAAATATATTAAAGACAAACTGTTAATCGGAAACAGGTGGCATCCTCTTTCCCATCGGCGACTTCCAGAACAAAATGTATTCACTCCATAAATGTGAAACAACAGAAAGACTTCCTTGCTACTTAACAGGTTTCTACTCATGATGCTAATTAATCTCATTTATTTGTCCCTGAGAATTACTAAGGCAGTGGACATATTGTTTCCTAACGATGTGGCAAAGGGTGGGGGAGTTTTAGCTTGGTGGTAAAACACTGCCCAGGATGAACAAGTTCATTCTCCAGGATGGCAAGGAATAAATGTTCATATTGTTCATAAAAGGGGATTTTTATGGTCTTCATCATGTTTGCTGTGTTATCTGAGCAATCGATGATACTTCCAACAGTGTGTTTTGTAACAGTGTATTGGGTTAACAAGAGAGCTAGACGGTTTACATTTCAAATTAATACAGTGCTTTTCTATTTCCCCTAAG
Seq C2 exon
TTTAAAGAAACTGCAGATGACGTATCAGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000039210:ENSRNOT00000060011:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=PU(5.3=65.4)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(3.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]