RnoINT0084122 @ rn6
Intron Retention
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117277932-117278431:+
Coord C1 exon
chr8:117277932-117278116
Coord A exon
chr8:117278117-117278189
Coord C2 exon
chr8:117278190-117278431
Length
73 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CCCCTTTTGACCCAACTTAGGTG
3' ss Score
7.3
Exon sequences
Seq C1 exon
TCATGAAATTGGGAAGACCACTGAGCGCCTGACTCAGTTAGAAGCAGAGCTCACAGATGTACAGGATGAGAACTTCAATGCCAACCATGCACTCAGTGGTCTGGAGAGAGACGGGCTCGCACTTAATCTCACACTGAGGCAGCTTGACCAGCATCTGGATATCCTCAAACACTCAAATTTCTTAG
Seq A exon
GTGAGTTGCTGGTTAACTAGGCGGGTGGGCCAGGCCAATGTTCAGCTGACTGACCCCTTTTGACCCAACTTAG
Seq C2 exon
GTGCCTATGACAGCATCCGACATGCCCACAGTCAGTCTACAGAAGCAGAGCGCCGGGCCAATGCCTCCACCTTTGCAATACCCAGCCCTGTGAGCAACTCAGCAGATACCCGGCGTCGGGCAGAAGTGCTAATGGGTGCCCAAAGAGAGAACTTCAACCGCCAGCACTTGGCCAACCAGCAGGCACTTGGACGGCTGTCCACACACACCCATACCCTGAGCCTGACGGGAGTAAATGAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768:ENSRNOT00000072098:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.095 A=NA C2=0.741
Domain overlap (PFAM):
C1:
PF041117=APG6=FE(39.5=100)
A:
NA
C2:
PF041117=APG6=PD(8.3=16.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGCTCGCACTTAATCTC
R:
ACAGGGCTGGGTATTGCAAAG
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]