RnoINT0084135 @ rn6
Intron Retention
Gene
ENSRNOG00000047768 | Lamb2
Description
laminin subunit beta 2 [Source:RGD Symbol;Acc:2988]
Coordinates
chr8:117270551-117270989:+
Coord C1 exon
chr8:117270551-117270671
Coord A exon
chr8:117270672-117270800
Coord C2 exon
chr8:117270801-117270989
Length
129 bp
Sequences
Splice sites
5' ss Seq
GGAGTGAGT
5' ss Score
6.05
3' ss Seq
GGTCTTTGCCTCCTCTCTAGAGT
3' ss Score
6.66
Exon sequences
Seq C1 exon
GTACATGGGGCCTGTATTTGCAAGCACAATACTCGTGGGCTCAACTGTGAGCAGTGTCAGGATTTCTATCAGGACCTTCCCTGGCATCCTGCTGAGGATGGCCATACTCACGCCTGTCGGA
Seq A exon
GTGAGTGAGACATAGAACCCTAACTTAGTTGGTCAAGCCCTAAGTACCTAGGCTTTTGCCTAAAGGGTATCCAGGCCTTGGTGACCCTCAACCCTCCTAGTTCCCCATTGGTCTTTGCCTCCTCTCTAG
Seq C2 exon
AGTGTGAGTGCAACGGGCATAGTCATAGCTGCCACTTTGACATGGCTGTGTACCTGGCATCTGGAAACGTAAGTGGAGGTGTCTGCGATGGCTGTCAGCACAACACGGCTGGGCGCCACTGCGAGCTCTGCCGGCCCTTCTTCTACCGTGACCCAACCAAGGACATGCGGGATCCAGCTGCGTGCCGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000047768:ENSRNOT00000072098:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(61.3=92.7)
A:
NA
C2:
PF0005319=Laminin_EGF=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAATACTCGTGGGCTCAA
R:
TGGGTCACGGTAGAAGAAGGG
Band lengths:
253-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]