RnoINT0084194 @ rn6
Intron Retention
Gene
ENSRNOG00000002667 | Lamc2
Description
laminin subunit gamma 2 [Source:RGD Symbol;Acc:621053]
Coordinates
chr13:70575314-70576605:-
Coord C1 exon
chr13:70576461-70576605
Coord A exon
chr13:70575464-70576460
Coord C2 exon
chr13:70575314-70575463
Length
997 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TCATATCTTTGTGTCCACAGGCA
3' ss Score
10.75
Exon sequences
Seq C1 exon
ATTAGAGAAAACCAAGTCCCTGACCCAGCAGTTGTCAAGGGAGGGCACCCAAGCCGACATCGAAGCTGATAGGTCCTATCAACATAGTCTCCGCCTCCTGGATTCAGCGTCTCAGCTTCAGGGAATCCGTGATTCCTCTTTTCAG
Seq A exon
GTGAGACCACTCATCCCGTGTGCACGCCGCACAGACAAACCGCCATGGAAACTTCTCTACAGGTTCTGTAAGGTCGCTCAACCTTCCAGCTTGTTCTCCCCGCTGGCTGTGTCAGTCAGTGTCACATTACTCAGTGCTGACTGAGGCGGCTGACTTATTAGGAGAAAGGGTTTCTTTAGCTTCGTGTTTCAGACAGTTAGAGACACAGCGCCTGCATCAGCTCTGTTCTGCTCAGGGCGGCAGCGTCTCTGGAGGACGGAGGACAAGATAGGCTAGTGTGCACAATCCCTTTAGAGCTCACAGGGCCTAGAGGCCTACTACACCCCACCCCACTGTCACATCACCCCCAGCACCCATGTCCACCAGAAGCTTAGCGCATGGCTGATAGCCCGTATTTGAAACCTAGCATGGACTTGGGCTTTGTGTAGGAGGTGACAGGTGCTTCCGGTCATCTGCCGTCTAGACTCTGAAAGGGAAAACGACTTGGATGTTTAACCTCGAACCCCTTAGTAGAGAAAAGTGTTATGTCTCCTCCCCAGTTCAATTTCAAATTGAAATCAGTAGAGAATTTCAGTGGAGTCTGATACGTTCCTCTATACTGCTAACAAGAAGACTTTTGCTATCAAAGGGCTTGCCTTTTTTTTTTTTCCTGCCATCAATCTCCTTAGCAATTGTAACCTTGTTGGATTAAGTTCACCTGCATACCTAACAAAGACACTCACAGTGATCTCCACAGAGAAATGTTCCATGAATAGATAAAGCAATTGCTCTTAACAATGTTTTTTTTTTTTTTTTTTTTTAAAGAGCAGAGACAAAGGAGACATCCTGCCTGTCATTCCTTGGCGTCCTGTATCGGTTGTGGTCAGCTTTGGGCCTTTAGGGCAAGCATCTGCTTTCTTGGCTTCTTTATTTCCAAATGGTGACAGCAGGTCCTGAAGCTGGTACGGTGATGTGTGTGAGCACACAGTCACACTCATTCATATCTTTGTGTCCACAG
Seq C2 exon
GCAGAGGCAAAGAGGATCAGGCAGAAGGCTGATTCCCTCTCCAACTTGGTGACCAAACAAATGGATGCATTCACGAGTGTGCGAAACAATCTGGGGAACTGGGAAAAAGAAACACGGCAGCTCTTGCAGACTGGGAAGGACAGAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002667:ENSRNOT00000036947:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.408 A=NA C2=0.420
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAGAGAAAACCAAGTCCCTGACC
R:
CTGTCTTCTGTCCTTCCCAGTC
Band lengths:
294-1291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]