RnoINT0084203 @ rn6
Intron Retention
Gene
ENSRNOG00000002667 | Lamc2
Description
laminin subunit gamma 2 [Source:RGD Symbol;Acc:621053]
Coordinates
chr13:70596262-70598856:-
Coord C1 exon
chr13:70598758-70598856
Coord A exon
chr13:70596399-70598757
Coord C2 exon
chr13:70596262-70596398
Length
2359 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
CATCTACAATTCTGCTGCAGGTG
3' ss Score
8.59
Exon sequences
Seq C1 exon
AGATTCCAAGTGTGACTGTGACCCAGCCGGCATCTCTGGACCCTGTGATTCTGGCCGATGTGTGTGCAAACCAGCCGTCACTGGAGAACGCTGTGACAG
Seq A exon
GTCTGTGTGAACCCCCTGAGGGCTTGGGGGACAGTGCTCTGGCACCTGGCATTTAAGAACGAGTCCACCAAGAGCAATTATGGAAAATGGATTCTGAACAAATGCCGAGGACTTCTTTCTCCCTGTCCTCAAAGCTGATCTTAAAAAAACAAACAAAACAAAACAAAACAACATTCATCGTGGCCCATCCTCTGTTTTGGGTCCCTTCTGTCTATTTTTCTGGTGACAAAGGTTGAGGGCCCCAGAGAGTCCCATTGGCATCTGGCTGGGACTCCCAGGTGCTTGGATGCAAGGTAGTGTGCACAAATGAGATCATGTGACTGGAATGGGTCTTGGGAAACGCCTGACCTAATTAAACACACTGAGGAAAATTCTTGTGACAGGGACTATGGCAGCGTATGGCCATACATAACCATTGTGTACTGAAAAGGAACCGCCCCAGGGAGGGGACGGTAGTTACACGCACACACATGAACTGGGGCAGCACGTCAGAGCCCTATGGGCATGAGCCATGTTGGGGCAGGTGAAGCATCAAGGAGCCATTAGCCTTCAGCTGCTGCCTTAGGACATCCCTTGAGTTCAAATTGTGTTCTGACTAAAGTCTTCTGTCCCCTGAGATGGCTGTGAGCGGAGGGGCTGTGAGGGTGGCCTCACAGCTCAAAGCCTCTTTCCCAATTCCTTAGAAGAAAGCAAGCATTTTCCTGGCACCCTGCCAAACACTTCTACCTGGGTGAAGGAAGTGAAGAATTCATTCCTAGCCTGTCTTTTCAGGTTTTTTTTTCTTTCCTGTTGAAGAAAGAGTTATAAATAAATAGCTTGAATGTTAAGAAAGCAGTCATGTTTTAAAAGTCTTTGTGTACATTGTCGGGGGAGGCACACTGGAGAGATGGCTCATCAGTTAAGAGTACTTGCTGCTCTTTCAGAGGGTCCCTCCTGGGAAACTCAGACACACACAGACACACACACAGACACACAGACACACCCAGACACACACAGAGACACACACACCCAGACACACAAACACACACACAGACACACACACGATTTGCATGTTGACACAGAGTGTTACTCTGTAACAGAGGCTGGACCTGGAACTCTTTATGTTAGCCAAGCTGGCCTTGAAGTCATAGCAATCCTCCTGCCTCATCCTCCCAAATGCTAGGATTATACTTCCTGTTGGGAAGCCTTATTTATTTAGAACTTGCTACAATAGCAGATGTCTTGAACATCTGATCTTCCTGCCTCTATTTCCCAGGTACTGGGATTACAGACATGTGTCACTAAACCTGACTTTGGAAGCCTTTTTGATTCTAGACTATGAAACAAAATAGGCAGCTACACAAAGCAACAATTGCCATCACCACAATTAGTAAATCTCTGCCAAAAATACTGTATCCCAATGGCATCAGTGGTCCACAGGCGTGACCATCGCTGGGTGACATGACGCTCATCCTTGCTTCTCTTCATCGTTCGTCATCCCACAGCATCCTGAAGTCCTCTTTCAATTGCACGGGCTCCTTTCCCTCCTTCGTCTCTTTCAATTGCACGGGCTCCTTTCCCTCCTTCGTCCTTCCCTCTCTGTGGGTTCGAATCCTACCTCAGCCCTTTTATCCTCCTCACTCAAGAACGTCAGAAATAATTCCTATCTCATAAATTCTCTTCAGGGGGGATTAAATGAAGGAATAGACACAAGGAGTAGAACCTATGGGGCTGCTCCTGTCCCATGTGGAGAAAATGGGAATCTTCTTTCCTGAAGCCTCACAGCTCAGCCCTGCCTGGCAGTTGTCCAAAGAGAAGCTGCCGAGGGCTTGTGCTGGGGCCAGGGGTGGAATGGCAGCCTGCAGATGACTGCTTTAGGGAGTTAGTCTCCAGATTTCTTTTATCTTTGTGACTGGCTCTTCCCTTCATGGGCCAGGACTAGGTTATCAACAGGAAATACTCCAGGGTCTTGGGGATTGGGACAGTCGAATAGATGCTGGGGTAAAAGCCTTCTTTCTGAGCCCCACTTCCCCTTCAGGGCAGGTCTACTCTTCGTAACTCTGTCATGTTCCTCCCTACACTACCCACCCCCTCCTCCCATCACCAAGGATGGGTCAGTAATTGAGTTTCCAGACTGCCAAGGTTCTAGTGAATGCAGAAATAGTGAACTCTCTCGGTTGTTGTGTGTGCGTTTGGGTGAGGGTGGGGGCTGGGATTGCCCCTCTGGTGGCTTGGAGCAGGGGTCATATGTAAACCTTGCCATCTTCCTCCCTCTGGGAATTAATAATGACAAGTGGGAGAGAAAGTAGGAGGGGCTGAGTGAGCCGTGGGATTCCCTTGAGCTAATGGTGCTGCGCTCACATCTACAATTCTGCTGCAG
Seq C2 exon
GTGCCGAGCAGGCTACTATCATCTGGACAGGGCAAACCCTGAGGGCTGCACCCAGTGTTTCTGCTATGGGCATTCAGACAGCTGCCACACCTCTGCTGACTTCAGTGTCCACAAAATCACCTCAACTTTCAATCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002667:ENSRNOT00000036947:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.0=85.3)
A:
NA
C2:
PF0005319=Laminin_EGF=PD(34.8=34.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]