RnoINT0084223 @ rn6
Intron Retention
Gene
ENSRNOG00000059507 | Lamc3
Description
laminin subunit gamma 3 [Source:RGD Symbol;Acc:1309399]
Coordinates
chr3:9273298-9275737:-
Coord C1 exon
chr3:9275538-9275737
Coord A exon
chr3:9273445-9275537
Coord C2 exon
chr3:9273298-9273444
Length
2093 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
TCCCTACTGCTGTCTTGCAGCTT
3' ss Score
10.23
Exon sequences
Seq C1 exon
GAATGAAGCTAAGGTTCCCTCTACCCAAGGAGCAGGCAGCGCTGAAGAGGAAAGCAGGCAGCATCAGGACCAGGCTCTTGAAGGACACGAAGAGAAAGACCAAGCAGGCAGAGAGGATGCTGGGAAATGCTGCCTCGCTCTCCTCCAACTCCCAGAAGAGAAGCAAAGAAGCAGAACTGATGTCCAAGGAGAATGCCAAG
Seq A exon
GTCAGGTTCAGGACGGCAGCAGCTTTCTCCGGTTTGGTGCCAAAGACGCCACATTGCTGAACTGTTGTGGGTCCTGGCTCCCAGATCAGGAGTTCACGTGGGTGACCTCACTAAGTTTTCAAGGAGTCACTGGTGGCCCTGTGAGAATGGGAAGACTCTAGGCTGAGCCGAATTCAAGGCTTAAGTCACATGACCAAGGCTCATACCTGGGCCCATTGGGTTATTCTCTAAACATCTAGATTTTCTTTGTTTTGTTTATTTCATCTTATTAATATTTAAAATAATCTTTTAGATTTACTTATTTTAATTTATCTGTACAAATGTTTCCCCTGCATGTATGTGTGTGTGCTCTGGATGTGCCTAGTATGGACAGAAGTCAGACGCTGGCGCTAGATCCCCTGGCTGTGAACTGTAGGTGCGGGCGAGTGACCCAGGTCCACTGAGCAACAGCTGATCTCAACTGCCGAGCCATCTCTCCAGCCCCCACTCGTTAACTTCTTGCCCATCTCACTTATCCTAGCCTGGCCTTCAACTCACTGTCTGACTGAGAATGATTACCCACACCCACCCCAGTTTATCCCCTGCTAAAGACTGAATTCAGGGCCTCACGCAGTCAAGGCAAACACATCCAAGGGAGCCACATTCCCCTCCCCTACGCTATCTCTAACTGCGGCCAAATTCTAACCACTGTGTGTGTGTGAGTGTGTGTGTTGTGTGTGTGTGTGTTGTGTGTGTGTGTGTTGTGTGTGTTGTGTGTGTGTGTGTTGTGTGTGTTGTGTGTTGTGTTGTGTGTGTGAGTGTGTTGTGTGTTGTGTGTGTTGTGTGTTGTGTGTGTTGTGTGTGTGTTGTGGTGTGTGTGTGCGTGTGTGATGTGTGTGTGAGTGTGTGTGGTGTGTGGTGTGTGTGTGTGTCGTAGGGGGGTATGTGTGTGGGGTGTATGTGTATGTGTGGTGTTTGTATGTGTGTGTGTGTTGTGTGTGTTGTGTGTGGGGTGTGTGTGGGGTGTCTGTGTGTGTTGTGTGTGTGTTGTGTGTGTGTGTTGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTTGTGTGTGTTGTATGTGTGTTGTGTGTGTTGTGTGTGTGTTGTGTGTGTGTTGTGTGTGTTGTGTGTGTGTTGTGTGTGTGTTTGTGTGTGTGTGTTGTGTTGTGTGTGTTGTGTGTGTGTGGTGTGTGTGTGTTTGTGTGTGTGATGTGTGTTGTGTGTGTGTTATGTGTGTGTTGTGTGTTGTGTGTGTGCTGTGGTGTGTATGTGGTGTGTGTGTGGTGTGTGTGTGGTGTGTGTGTTGTGTGTGTGTTGTGTGTTGTGTGTGTGTTGTGTGTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTATGTTCACATGTGTTCCATCCTCCAGTCCACTACTCACACTCAGGTGAATTCTCTTCTGGTGCCTAAATTCCCAAACGACCGACCTGAAACTGGAAATACTAGGTGCAGTGTTTGCCCCACGACTCCTCTTCTCCATCCCTGGACCTCTGTTTCCCCATCTATAAAATAGGTAAAATTTCTCCACTAAGGAGGGATGAGTAATTTGTAACAATTTTTTTGTTTGTTTTTTCTTTTTTTTGGAGCTGGGGACGGAACCCAGGGCCTTGCACTTGCTAGGCAAGTGCTCTACCACTGAGCTAAATCCCCAACCCCAATTTGTAACAATTTATACTGGAGACACATCCCGTCTCCAGTGCATACCTGTTGAGTGTGGGAATGAATGAATGAATGAATGACTGTGTTCTAGATTATGACGTACACTGCTTGGAATCATGTTGTAAGAAGTGTTGTTCAAGCCAGACCTGGTGGTACGAGCCTAAATCCCAGCTACTTCGAGGGCTGATGCAGGAGGACCACAAATCCAAGGCTGTCCTAGGCAGCAGAGAAACCTTATTTCAAAATAAAATATAAGAGCTGGTCCTGGCACGTAGATCAGCTGCAAAGTGTTTACCTAGCATGTTCGAGATTCAGTTCCAACTTCAGTACTGAAAAAGAAAAACAAGGTTCCTCTTTCCCAAAGGGCTCATTCTTGCCCTCCCTACTGCTGTCTTGCAG
Seq C2 exon
CTTGCCAGAGCTTTCCTGAGGGAAGGGAAGCAGAACTACCGTCATGCCAGCCGACTCGCCAGCCAGACCCAGGCCACACTCCGCCAGGCCTCTCGCCTGGTGCTGACCTCAGAAGCACGGAAACAGGAGCTGGAAGAAGCTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059507:ENSRNOT00000090137:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.642 A=NA C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]