RnoINT0086691 @ rn6
Intron Retention
Gene
ENSRNOG00000015911 | Lrp5
Description
LDL receptor related protein 5 [Source:RGD Symbol;Acc:1309329]
Coordinates
chr1:218829342-218832724:-
Coord C1 exon
chr1:218832599-218832724
Coord A exon
chr1:218829534-218832598
Coord C2 exon
chr1:218829342-218829533
Length
3065 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGTCTCCTTCCCTCCCCTAGAGC
3' ss Score
9.74
Exon sequences
Seq C1 exon
CAGCCCATCCTTGTGCCCGAGACAATGGCGGCTGCTCCCATATCTGCATCGCCAAGGGTGATGGGACACCGCGCTGCTCATGCCCAGTCCACCTCGTGCTCCTGCAGAACCTGCTGACTTGTGGTG
Seq A exon
GTGAGTGACTCCTTGGGACTTGGAGTACAGAGCAATAGCACTTGCATGCTTTAAAACTGCAGTCCCTTTGGCATCTAATCTCCAAAGCATGTTATTTCTTTACTTAAGGGCGCCTTGGAGACCAGGGGTTAATCATGGCTGTTATTCCTCAGCTACCCACTTTGGTTTTTTAGACAAGGTTTCTCAATGGGAACTGGAGCTTGCCGATTAGGCTGTGCTGTCTGTCCAGTGGCCTCAAAGATCCTTTTGTCTCTGCTTCCCCACAACTGGGGTTATGAGCATGCGCCATCACACCCGGCTTTTTACATTAGGTGCTGGGGATTGAACTCAGGTCTTCACACTTGTGTGGCGTATTCTGATTCCATTCCTAGTAGCTGAAATATTTAGAAAAAAAAAAAAATCGAGAGACAACTTCTTCAGCCCAAGTGCTATTTAGCAGTGTGTTGTGAGGGGCAGGGTGGCTCAACGGTAAGTATACTTGCCTAGAAGTATTTGTTTGATCTCTAGATACTCGGGAGTGTTTCAGCTGTCTCTGTTCTGATTTCTACTTTAATTCTGCTGTGGTCTGAGAGCTTCTCTTGCGGCATCTCTGTTCTTTATATATTGACGTGTGCATTATGGCCGGCGTCTATTCTGGACTCAGTCTTGGTAAATGTTTCATGTGTTCTTGAGAAGACTGGGGATTCTACTGTTGTCAGGTGTAATGTTCTAGAAAAAATTATTAGGTTCAGTTGATTGATAACACAGATCAGTCTTCTTTTATCTTTCCTGACCGCTCAGTCCACTATCAGTTACTGACACGGCTGTTGGATTTTACAACAGATTTAAACAAAGATTTCTTTTTATTTTGTGTGTATAGGTGTTTGCCCGCATTCGTGTCTATGCAGTGTACAGTGTCCACAGAAGAGGGCATCGTATCTCCCACAACCAGAGTCACAGCAGTTTTGAGTTGTCAGATAGGTGCAGCCAGAGCTCTTAGGGTCTCTCTAGTCCCCTAATAACAGATTTCTGCTTGACCTTTCTCCTCCCCCTCTATCTATTCTTTTCTCCTGGGGCTGCATGGTTGTGGTGGTGGCGTGTCATCAAGAACCAGGTCAAGGAAGGCCCAGGTTCAAATCCTGGACTCTGACTGCTAAGATGAGTGGCCTTCAGCTGGATACACACCGTTTGTGAGCCGTTGCTTCCCCTGTAGAGACTGGGAACGTCTACCTGGCAGGCTGGTTTCCCTTTCAGTAACAGAGCACTTGTGGGAATGGCCATAATAAAAAGTGACAGTCTTTGATGTCCTCTTGATTAAGCATACTTCCAGGGCTTCCTCTCTATTGTATGCTGGGCAACCTGGGAAGAATTCTACTTTGCTCGTCCTCCGGGAGCTCCTGGGAGCATCAGGCTTCATGCATGACCTCACCCTGTATACTTTGGGCTTTGAGCAACTGGACACTTGTTCTTTTAATGGCCAGTCTTGCTCCTGGGAGACTGGTCTGACCTCTCTTACGCTGCCCGACACTTCGAACCTTAGAGTTTGGCCAAGAGCAGAGAGGACATTTTGTGTCTGTCCATTCCCTTTCCCTTCTAGTGGCTTTAACAGACTTTTGGTCTGAAGTTGTCTGTGTGGCTCTCATGGATGCCTGAGCCTCGCTGCCTAGAGCAGGAGCTATGAAGTGGTCCCCACTGATCCAGGCCTGGTATCCATTTGGAAGGATGTGCCTAGCCTACCATGAAACTTGGAACTCCCTTTTGGTTTGTTTGTTTGTTTTTTTTTTTTTTTTTTTTTTTTGATGTTTTTGTTTGGTTCGTTTGTTTGTTCTTTGAGATAGTGTCTCCTGCAGTCCAGATTGGCCTTGGGCTTTTGATGTAGTTAAAGGCAACCTCGGATCCCAAGTGCTGTGATTACAGGCACGTGCCTTTATCCTCGATTTGTGGCCCCTTCCTTTTGATGTAGTTAAAGGCAACCTCGGATCCCAAGTGCTGTGATTACAGGCACGTGCCTTTATCCTCGATTTGTGGCCCCTTCCTACAGCCTGAGAGATGTGTATCTTCTACGCAGACACTTCGAAGTCTTCCATGGCCCCTTGTCTGGCCGCAGGATGAAGGACTTGCTGAGGCCCTTAGATGGGAGCCTTATGATATAACAAGCAGCAGGCCTGCCAGGGCCTAACGTGCCACAGCGCTTCAGCAGTACAGCCTCCCTGCCTCTGTGTAGCTGGCCCTAGCCACACACCTGTCCCTTCCCCACAGGCTTGTCACTCATGCAGTGGCACCTGGGTGTAGAGAGGAGGATATGGAGGCTTTGAGAAGCCAAGGAGCATCTCAGGTTTTCATCCTGAATATAGTGGATGTCACGATTGCTACGTAATCCAAAGTTCACAGTCAGTCCATGCTCCGTATCAAAGGAAAGAGACATGTGGGGGCTCAATGGATAAGAACACTTAACTCTGCAAGCATGAAGACCTGAACCCAACCTCCAGCAGCCACATCAAAAACAGGTGTGACTCTTTGGGCACCTGTAACCCCAGTGCTATGGGGAGAAAGACTGAGACAGCGTCACCGAGGCTTGCCGACTACCAACCTAGCTCCAGGTTCAGGGAGAGACCCTTTTTCAAAGCATTAAGGTTGAAAGTGATGGAGAAAATTGTTGTTCACGCCTGCATAGGTGTATGCACCTGCACATGCATGTATACATACGCACGCACGCACAGAAGGAAATATGAGAGAGACATTGAGGATGTATCTCAGTTGGTAGAGAACATGCAGGAGGCCCTGGGTTCAATCCTTTGCACTGTGTTGACCAGATGTGGTGGTACACACATGTAACCCCAATACTATGGAGGTAGAGGCAGGAGGATCAGAAGCTCTTGAGGTCTTCCTTGACTATACAGCAAGTTTGAAAGCAACTTTTTCATCCCTGCCTTCCTTCATCTGTCCTGGGGCTGAAGGTGTCTCATGAGCAGGAGGCAGTGCCCAGGGCACTGCTGACACAAAGTCAGTGCACTGAAGCCCAGCTATGCCTTTGTGAGGCTCACTGGGTGGAACCTGCATGACTTTGGTCTCCTTCCCTCCCCTAG
Seq C2 exon
AGCCTCCTACCTGCTCCCCTGATCAGTTTGCATGTGCCACTGGTGAGATTGACTGCATCCCTGGAGCCTGGCGCTGTGACGGCTTCCCTGAGTGTGCTGACCAGAGTGATGAGGAAGGCTGCCCAGTGTGCTCTGCCTCTCAGTTCCCCTGTGCTCGAGGCCAGTGCGTGGACCTGCGTTTACGCTGCGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015911:ENSRNOT00000022213:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=60.0),PF0005713=Ldl_recept_a=PU(92.0=35.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]