RnoINT0086985 @ rn6
Intron Retention
Gene
ENSRNOG00000028266 | Lrrc55
Description
leucine rich repeat containing 55 [Source:RGD Symbol;Acc:1561726]
Coordinates
chr3:72594007-72595721:-
Coord C1 exon
chr3:72595646-72595721
Coord A exon
chr3:72594076-72595645
Coord C2 exon
chr3:72594007-72594075
Length
1570 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
3' ss Seq
TGTTCATTCCTCAAATCTAGGGA
3' ss Score
8.78
Exon sequences
Seq C1 exon
ATCTTTGAAAAACAGGAGATGTACCTCCTACCGCGTTATGTTGAAAGAGAAACTGAAGAATCTAAGAAAGTGATAG
Seq A exon
GTGAGAACCCCTGTACAGGCGATGGGGAGACCCATCTGGGTAGGCCCAGTCCTGTTAGCAAGGCTGGTTTGGATACAAAAATGAAAACAAGAGCTTTCCATCTTGGCTCCAACCCTAGCAAGTATCCATCATCCACTTGGCCACCCAGCTGTCCTAGAATGCATGGAGAAGGAGAACATTTCATATTCCAACTCATCTGCATTGATCTAATCAACCAAAAGAGACCCTGGAAGATTTACCCCTCATTCTTGCTTTTAATGCCTAGGCCAGAGCTCTGTTCCTATGAAATACGATATAGAACTATGCCCTGCTCTCCCTGACCACTCAACTGTGGCCAACAATGGTAGACTCCAGCTATTCTCCACAAGCTAAGCTTATTGCCTAAAGTGTTTTGGAAAGGAACTCTTAGAAATAGTATTTCTGATAAAAATCACTTATCTTTCCATAGAAGAACACCATGCTCACTTATAGTAATCTCCTGGACAGTACTGTTTACTGAATTATAGTTACCATATTTTAAGATATACTACTCTGTTTTACATAGAATTAGAACCAGACAAGACACCAAATGCCTCTTGAGATCAAATGTTCTTTGGAGCGGCACAATTTGATCTCCATTAATGGCAAAGACTTCTAAGCAAGATATATCAAGACAATGTTTCTCCATTTTCTAAGAGGTCCCCAGTTAACTAAGGCACAAGAAGAGGGACATTTAGCCTCCACACTAACGTGAAATTCTAATACCACCACCAGCCGGTTCAGGCTGTCAGAACTAAATGTCTAGAGATAGTCTAATAAGCCTTGTGGAAATTGTTTACATATCCTGGTGATGGCAAACCCATTATGATGTTCCCATGAAGTTTTGTTCAATTTTCCCACACTGGCTAATGTGGGATTGTTTGTGTGTCCATATGTGTATCTATGGTTCATTTATGTTGGTTATCTGCTGACTTGGAGAATATTCCTTTAGAACTTGGGTTCAAATCTCTGACACAGTCCACTCGGCTATCAAGTTGATATACAAATATGCATCCTACCCATTTGTCTAGCTGCTCAGGAAATATGAAAAAAGCCAATGCTATAATGGAAACACTCTAATGAAAACCTGGCTCCTCCCTACTTCCCTCTGTCTTCCTCTATCCCCTAGACACTTGTACCCCTCAAAGAGGTTTTCTTTATGCTGTGTCTGAAGCTATCATGTCATAACTAACCAACAAGATTATGGTGGTCAAGGGCTAGCCAATAAAATTCTTCTTTAGAAAAGATCCCACATCTGCACCACACTATTCTGGAACATTCCCCTCTGGTTATCCTTAAGATACCACATCCTTTCCCATTTTCTCCAGGATTCCCACAGAAACTTGAAAAAAGAGGTTGCCCAAACATACTATGGAGTTTCATGGTCTCAGTTAAGGGCTTGATGTAATGTATTTGGAGAGATTGGGACATGTATTTCATTCCAACCTTTGAAAAGGCCAACAGCTCCATTTTCTCCTTACACATATTTGTTGCCATTCTTTCCATTGCAGAAGAGCACAAAATGATATCTTTGTTCATTCCTCAAATCTAG
Seq C2 exon
GGAACCTTGTCTTGTATGGTCCAGAAGGAGGCAAACGGAAGTAAAAGAGGCAGGACCCAAGGGCCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028266:ENSRNOT00000031745:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]