RnoINT0087600 @ rn6
Intron Retention
Gene
ENSRNOG00000020871 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:RGD Symbol;Acc:1307033]
Coordinates
chr1:84147755-84148077:-
Coord C1 exon
chr1:84148019-84148077
Coord A exon
chr1:84147894-84148018
Coord C2 exon
chr1:84147755-84147893
Length
125 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
ATCCCTGATTGTCTCTGAAGCTT
3' ss Score
5.98
Exon sequences
Seq C1 exon
TGCTGCTGCCTGTCGTTGCTGCTTAGCCCAGACACCTAGGAGTAGCCACTGCACCCGAG
Seq A exon
GTGCGTTCTTCCAGGTGGGGTATGGGTGAGGGATGAGAGGACTCTTTCCCCAGCCTCATTCAAATTGAACAGCTAGATAGAGGTTCAGCCCCGCTTCTCTACTGAATCCCTGATTGTCTCTGAAG
Seq C2 exon
CTTCCTGCAGGGTCCGGAGCTGCCCACCCGGCAGGTGTACAGATCAACAGGGGTGCCTGACCCCAACACCTTCGGTGCCCAGCCCCAGCCGCAGTCCGGTGGAGAAGAGACAGGTATCCCTCAACTGGCAGCCACTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020871:ENSRNOT00000028322:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTGCCTGTCGTTG
R:
GTGGCTGCCAGTTGAGGGATA
Band lengths:
194-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]