RnoINT0087618 @ rn6
Intron Retention
Gene
ENSRNOG00000020871 | Ltbp4
Description
latent transforming growth factor beta binding protein 4 [Source:RGD Symbol;Acc:1307033]
Coordinates
chr1:84141357-84141888:-
Coord C1 exon
chr1:84141786-84141888
Coord A exon
chr1:84141432-84141785
Coord C2 exon
chr1:84141357-84141431
Length
354 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
3' ss Seq
GATCCCTCCTTTCTCCACAGGGA
3' ss Score
12.07
Exon sequences
Seq C1 exon
TGTGCATCGCCGCTGCCGGGACTCCGGACGCAGGAAGTATGCTGCCGAGGGGAGGGCTTGGCCTGGGGTGTTCATGATTGTCACCCGTGCGCGGAACACTTGG
Seq A exon
GTAAGAAGCCTTGGGTTGTCCCCAAACCTCGCCTCTTCTCCTTCGGGCCCAGATAAACCCTAGTCACAAATTCTAGCTATATCTACCTACCTTGGGGGTGGTCATGTCTATCTAGGTTTTTCTATACCGTTGAGTTCATTTACCCTATTTCCAAATTTGATCACTTTACAAATGGCTTTTGTGCCTTTGACTCATCAGTGCATACGACCTTACTTCTGAGCTGCCAGTGGAGGGGCTGACTCTACTTCAGACCACACTTCACTCCTTTTAGTCCCTCCCATTTCATCTCTCATCAAAACTGCCTGGTTATCTCTCTGCCAACCTGTCCGTGCCCGATCCCTCCTTTCTCCACAG
Seq C2 exon
GGAACTCCAACCGAGTGAGTGGTCCAAATGGGCTTTGTCCAACCGGATTCGAAAGAGTTAATGGGTCCTGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020871:ENSRNOT00000028322:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]