RnoINT0092505 @ rn6
Intron Retention
Gene
ENSRNOG00000056332 | Miga1
Description
mitoguardin 1 [Source:RGD Symbol;Acc:1559958]
Coordinates
chr2:257544717-257546799:-
Coord C1 exon
chr2:257546701-257546799
Coord A exon
chr2:257544895-257546700
Coord C2 exon
chr2:257544717-257544894
Length
1806 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TTTAAACTTCTCTTTTCCAGATC
3' ss Score
10.83
Exon sequences
Seq C1 exon
ATGTCCGGAGAGACAGTCAGCAGATCACAGTTCTCCTTGAAGACATGTGCAATTAGAGTGTTTGCCCTCCCTGTGTCTTGGTACTATTCTCTCTCCCAG
Seq A exon
GTAAACATGGAGTGGAATTTGAATAATACCTTCATGTCGTTCAGTCGAGGCTGTTGTGTTTTGTGGTTCTAGGGATTTAAACCCAGAGTTTGCCTAGCAGGCTTACTGCTACGGAGCTACGGTCTAAGCCCCTGAGGTTTTCACACAGCACAGGGGACTGTACTACTTCAGATAGCTCCCTTTCTTCAGTAGGTGTGGTGACATACACGTTCAGTCCTGTTCCTTACATCTTTATATCTGCTCTACTCAACTGTGCATAATAATCTTCAAGGTTTATTGTAGCACGCACTGGAATTTGCTTCTCTTTTTTTATTTTTTTTAAAGATTTATTCTATATAAATACACTGCAGCTGTCCTCAAGACACACCAGAAGAGGACATCAGATCCTATTACAGATGGTTGTGAGCCACCGTGTAGTTGCTGGGATTTGAACTCAGGACCTCTGAAAGAACAGTCAGTGTTCTTAACCGCTGAGCCATCTCTCCAGCCCTGGAATTTGCTTTTCTATATGGAATTAACATCCCATTGTACGGGATGCTATATATTTCCATCCACCTGGGAGGTGCTTAGGTTGTTTCTGTGTTTTAGCCGTCTTGAGCAATCTTCTCTAAGCATGGAGGTCTACATAATGTTTTCAGGTTTGTGCCTTTAGACATCATGGAGCCACATCCAGGTAATTGCAGCACTCCAGAGGCAAAGGCTGGAAGACCATGAATTTAAGGACAGCCTGGGCTATAAAGGGAACTCCTGTTCTAAAAGAAAAAAGGGGGAGGGGAATGGGACTGGGGAGATGTTCTAGTTCACACTAGACCAGGTTTGACCTCCAGAATCCACACTAAAAAAAAGAAAATCCAAGACAGCAGGCACAGTGGCGACCAGTTGGGGGGCAAAGATAGGAAGCGCCTTGGTGTGTGCCCATAAACCCTGGCTTGTGACCAGCTAGTCCCGCCAGATTAGTGAGCTCTGGGTTCAGGTGGACAGTGCTGGGGACGACAGCTGGTGTTGACCCCTGTCCCTGAGTGCCAGAAACGCCAAGGGGAAGAGGAAATGCCCTGCTTTCGGGTCTCTCTAGAGTGATTCTTCAGAAGTAGGATGTTTGAATCATGTTAGCTCTTTTCATGTTTTCGGGGTTGCTGTGATGGTTCCCATAGCCAGGGCTTAGCTTTATCCCACTGTGGAGGCCGCCCTACATGCTCTCCAGGTCTTCCCTCGTTCCCTGGGTTGCTGTGTGCTCTGTTATTAGTATCTTTTATTCTAGTTTTAAAATATCTTTATTTTGCCTGTGCATATATCTGGGCACCATGTGCCTGCCTTGGTCTGTGGAGACCAGAAGAGGGTATTGACTCCCAACTTCTCTGATTATCCAGATAGTAGATCTCAAAACAGTTTTTGATTAATGGATGAATAAAATAACTTATTCCTGTAGTGTTGAGAAATAAGTTAACATGCAGTTGATTAAAATTCCAGGCGTATATGTTAAAAATGAGTTCAGCTTTAAAGTCCGGCTTAATTATTTCTGTAGTTAAAAGACACTGTTGCAGGGATTGATCTTCACTCGGTCAAGAAACATTCACAAGGTCAAATTATTTTACATATCTATTAACTTTCAAAATAATAGTTTATCTCAAACTCAAGATAATTTGAGAGAAGTGAGGGCTAATCCAGGCCACCTGGCTGGTGCTGGCCAAGCAGTCTCTTGGTCAGCTCACAGAGGAGGAAGATCGAGTCCTGCCTCTACTCTGGCCTTTTGTGAACTGATGCGAGGGTTGTTTGTTTGTTTGTTTGTTTTAAACTTCTCTTTTCCAG
Seq C2 exon
ATCAAGTTTCCCCCAGCAGCTAAGAAGTTGTTTATGGTAACCGCAGTAAGTGCTGTGTCTGTGATTTTTCTGGCTCACCACTTCAAAAGACGACGGGGAAAACAGAAAGGAAAGGTGCTGCCCTGGGAGCCAGAGCACCTGCTCCTTGAGCACACTAGGAGAGCAGCGTCAGACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056332:ENSRNOT00000089370:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF102654=DUF2217=PU(1.3=21.2)
A:
NA
C2:
PF102654=DUF2217=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGAGACAGTCAGCAGAT
R:
TTGTCTGACGCTGCTCTCCTA
Band lengths:
271-2077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]