RnoINT0092526 @ rn6
Intron Retention
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8932931-8935067:+
Coord C1 exon
chr3:8932931-8933166
Coord A exon
chr3:8933167-8934856
Coord C2 exon
chr3:8934857-8935067
Length
1690 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
CACTTATCTCTTCCCTCCAGTCT
3' ss Score
8.67
Exon sequences
Seq C1 exon
CTTTGTGGAATGACCTGTTATGTGTGCCCCTGTCCTGCTGGGGAGTGGATGGTGCCCAGGACCCAGCCAGAGACCAGCTGAAGACGTTCTCCTCGGAAGCTCTCACCCCAGGAGGTCCCGTCCCGGGTGCTGGGCCTACCATGGCATTCCGTAGGACTGAGGGTATGTCCATGATCCAGGCTCTGGCCATGACTGTGGCTGAGATACCAGTGTTCCTGTACACGACTTTTGGTCAG
Seq A exon
GTAAGATGGGTGTGGGCCTTTCTAGGGGTCCTCAGTGCCTTAAGAGAGCTGAGTCCTCCTCAAGGCTATGTGGCTTAAGTAGTTTCTTATTATGTTATTGTAATTCCATGTGTCTTAGCTAGTTTCTCATTGCTGTGTTGAAAGACCAAAGCAATTTAAGGGAGAAGGGGTTATTTGGGCTCACGGTTCGAGTGCTTTACAGTCCGTTGTGTGGAAGACCAGCAGACGCAGGGAGCTGGCTGGTCGCACAGCTCCTGTACTCAGGAAATGGTGGCAGACAGACACCAGTACTTAGCTTGTTTTCGCCTTTTTATACAGGGCGTCTTGCCCTGCCCAGCAGGGCTCCCCTCCACAAGTAAGATAATCTTCCCACCAAATGACTTGAGATATCCCTCAGAGTCTTCGAGGCTAGTATTATGATAGGGAATTCTTCACAGGTGTGTCAGGAGACTTGCCTCTTAGGAGACGCTAGTTCGGTCAGGTAACAGTCAACACTAACTATCCGTATGTATATCTGGTATCTTTTCTCTGAGTAAGTCAGGATTACATTAAAAATTGGGGCCCTAAACCCAGTGTTTACCCAAAGGCTAGGTGACCCCTTGACTTTAGTTGTCTCTAACTCCCCTGGCACCCCTGAAGCTCTTTTTTGTGGGACAGAGTTCCACCTGGGCCAGCAGCAGAGGGTGGCCAGGATGGGCCTATTTGGATGAATGGTCTCGGGTAGTGAATGTCATTGGGAAATGCAGTCATCAGGGTTTGAGGTGTGTATCTGTTGTTGTAAAAATATAAAAAATAAAAAAAGCATAAGGTTGTCTTTTATCCTGCTAGGTCTGGCACCGAGGTGCCCCAAGATATCTGCTGGATATCTTGCCAGAAGCACACATTCCAGTTCCTTGGCAGCCCAGACTAACTGCCCCACACTCTATTACACTTAAATCTACACATGAAAGAACACACAACACAATAACCTTTGACCCAATTGGTAAGATATAATTGCCCACCTAAACATACAAAGCCCAGTACCATCCATCCCTTAAGAACATTAATATCAACCTGTAAATACACAGAGCGGAATCTTAACATCACCTGCCATGGCCTCTCTCCCTCTCCCTCCTGTCTCTTCCCTTTTTTGTTCCAGTCTCCTCCTCTTCCTTTAAACTCTTCTCCTGCCCATCCATCTATCTCATCCAATGACAGGCTATCCTGTCATTGGATGTCTATCCTGTACCTGCCCCTCACCTGTATTTTACAAATTCAGTGGGGAGAAGGTTCTGGTGAAGTCACCTGAGTCCTGAGTATGTGACTAGGCAACTGTCCTTGGGGCAGTGGAATTAGCATCAAAATACAGAGAACTCCAGGATAAACCACAACTTGTATCGGTCACTGCCTGCACACATCTCAACTGATGTGACCCTCACGCTCCTCATTCAGCTGGAATTCTGACAGGTGACACAGGTTAAGCCCTGGTGCTGCACACAGGCAAAGAACAGTGGCCAGCATTTTGGCTCTCACTGGACCTTAGGACACATCTCTTGTGCTCTCTTTATATTTCTGACTCACATTTCAGAGAAGGTGACTTGATTTACTTCAGTGCCCCTTGCCACCCCTTGGGTCAGCAGGGGAATACTGTGGCCACACCCAGAGCTTCCCTTTGGGCGACATAACCAGACCACTTATCTCTTCCCTCCAG
Seq C2 exon
TCTGCGTTCTCCCAACTGCGGTTGACCCCAGGCCTGAGAAAGGTTCTTTTTGCCACGGCCCTCGGGACTGTGGCCTTGGCCCTGGCTGCCCACCAGCTGAAAAGGCGCCGTCGGAAGAAGAAACAGGTGGGCCCCGAGATGGGAAGTGAGCAGCTGGGCACCTTCCCCATGCCCATCCTCATGGCCCGCAAGGTCCCTTCGGTGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513:ENSRNOT00000065300:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.211
Domain overlap (PFAM):
C1:
PF102654=DUF2217=PU(0.4=6.2)
A:
NA
C2:
PF102654=DUF2217=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATGTGTGCCCCTGTCCTG
R:
GGCCCACCTGTTTCTTCTTCC
Band lengths:
353-2043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]