RnoINT0095405 @ rn6
Intron Retention
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40588386-40591116:+
Coord C1 exon
chr15:40588386-40588511
Coord A exon
chr15:40588512-40591066
Coord C2 exon
chr15:40591067-40591116
Length
2555 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATTTTGCTCTTTCTCACTAGGTT
3' ss Score
11.08
Exon sequences
Seq C1 exon
GCAATAGTGGTTGAAAATGCAAGTGTGCTGGTACACTGTTCGGATGGGTGGGACAGGACCTCCCAAGTGTGTTCCCTTGGTTCGCTCTTGTTGGATTCCTACTACAGGACAATGAAAGGATTCATG
Seq A exon
GTAAGAATTTGTTCCACTGAACCCAGTGATTTCTTTACCAAGGGGATGCTTGGCAGTATTCAGAGGCAGGTTTATACTATGGTCATGCAGTTGATAGATTCTGCACAGAGCAGCTCCAGGTAGATTCCTTGGGCCCTCGATGTGTGTGCTTCTGCAGCAGAGAACCTTCAGACAGACTAACCTCCATTTGTGCAGCTTTTGGCCAAATACTTTAGATTTAGAGGTTGACACCCCACTATCACCACCACCACCACCCTAAAGTGTTACAAACTAGTTGATATTTTCTCCCACACCTCTATCTAGTAAAAGTAATGTAAAATACAGTATTTAATTGTAAACCATGAGTTGAAGAAATGAAATGTTCATCTTTAGCACCCTGATATTAAGTTAACATTGTGCCATTTCTGTTTATGAAACCAAATTTATTAGTTGAACAATTTTCTTCTAGGCAGGAATTTATTTTCTATTTATTTTATGTTTAGTATTTGATTAGATAAACTTTTGAATTTGTGTGTAAAACAGGTTTGGGAGGTATAGACAGAGGGTCAAGAGTTAAAGGTCATCCTTTACTATGTTATCAGTTGAGACCAACCTGAGCTATGAGACCCTAAGAACAAAACAGAATTTCCACAGAAATGTATAGTGAGTAGATGAAGAAGTATTAGATAGGTTTAAGCACTAATTAATAATCAGAGTCCTGCCTGTGACAAGGGTGACCTAAAGTCTCAGACTTTGGTCAGCACCATTACTCTGTCATCATACTGAGTCTGGGTAAACTAACTGGAAATAAGAGAACTACGTGAAAATGGTGACAATAAAAATAACTTTAGGTGGCTAGACAGTGATGCACGCCTTTAGTTCCAGCACTTGGGAGGCAGAGGCAGGTGGATCTCTGTGAGTTTGAGGCCAGCCTGGTCTACAGAGAAAGTACTAGGACAGCCAATGATGCACAGGGAAACCCTGTCTTGAAAAACCAAAACAGCAAACAGCAAACCTAAAACACTTAGTAAAATAGCATTCGGCTTCCTTGGACAGTGTAAGGAGGAATGTTAGTCTTTGCTTATTTATTTGCCAGGCATCTGAGTCAAGCCATGTAATAAATGACCAGACCCACAGTGGAGCCCTTTTAGATGCATGAGGGATAGGCTGAGTGGCTGTGAGTAAGCCTTCTAAGGACAAGCATGCTGGGATGTGTACTTTCCCCTTGAGGCAGTGAGAGCCGGTAGAAAAGAGCAAGGGGGAGCTTGATGAAAGATGCTCTGTAAAAAGATGTCTTGGCCTTGTGAAGGCAGAAGGGAGCGAGATGGAGGCTGAGGGTCCAGGAGAGCGACTATTAGTTCATCTGAAGAGGGAGGAAAACTGAAGGTAAGGCAGCAGGGCACACACAAGTACACAGGTGGTCTCAGGGAACAGTGACAAAGGACCAGTGCCAGTTGCCCGTAGATGGAGTGGGAGTGGGGGATAGGAGCCCTTGTCTGGGTTTCCAGGCTGCTGAGTCAGCTCCCTGCTCTTCTCTGAGCTAAGCAGAGGAGGAGGTTAGAGAGGAGGATACTAAGTCAGGACGAATAGAATGATAGAGGACCCAGCATGAAATCCATATTTCCACCCACAGTCACAGCATTGAAGTGACAATGGCACCCAGGATAGGGCCTATTAATGTGTTCAGGAAACTGCATCCTTGACCAGTAGGCTCTGTTAAATGGATTTAAGGCAACATCGGAGATACCAAAGTGGCCATCCTGACACTGAAAAAGGATATGTTTGGTGATTATGTAATGAGATTATAAAGTGTGTCAATGACTAAGAAGTTCCTTCAGATCTGACTGAAACATTAGAGATCTGTTCTCTCATTGGCTATGGTGATGCATATCTTTAGTCCCTGTTCTTGGGAAGCTGAGACAGAAGGATGGAGAGTTCAGCCCATATTGAAAAGTTGATTCAGCAAAACAAAAAAGGAAAGGAGTTAGTCAACAGAGAAGCCATGACCTGAAAGACTGAACTGCATATGCAAGGATGCCAGTGTTGGGATCTGAGTGAACAAAAGCTAACTCTTATTGACTCTGTTTGGTTTTCCAAGAGACAGGGTCTTCCTTACCGTTTTTTCTTTACATATGCAATGTACAAATATGCCAGTGGTTGAAATGCTTGCCCCTGTACTACAGAGCTGGGCGTTACTAGCATTTTAGTTAGATTTTCTAGTTCCCTTCTTGCACCCCACACTCTATTTGAGGACAGAGTTTCCCCATGGATCTAGCTGGTCTCTAATTCTCTATTCTCTTGCCTGAGCCTCTGATTGCTGGAGTTCAGCTGGCTTTTCCATGTTGCTGCCTTACCAAGTGTGTTTTTGATGAGTGCAATGGGAATCGTTCACTGCAAGACTACTTTCCATGTCTTTTCACTCTTCGGTAACCCTCACTCTCCTCTAGGTTCTGTCTACTTTTTTTTTAAATGTAATCTTTTTATTTTTTTAATCTCTGCTCTTAGCAGAATTGTCACTGTGTTTTTTTAAGTTGATAATAGTTATATAGTTAGTTGATTTTGCTCTTTCTCACTAG
Seq C2 exon
GTTTTAATAGAAAAAGATTGGATATCATTTGGGCATAAATTTTCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918:ENSRNOT00000065328:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(10.8=100)
A:
NA
C2:
PF066029=Myotub-related=FE(4.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]