RnoINT0095478 @ rn6
Intron Retention
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165354856-165355164:+
Coord C1 exon
chr5:165354856-165354954
Coord A exon
chr5:165354955-165355041
Coord C2 exon
chr5:165355042-165355164
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
AGTGTTCTCTGTTTGCTTAGGCC
3' ss Score
7.17
Exon sequences
Seq C1 exon
GTTATACCTCAGCTCATTGCAAGAATTGACACGCCCAGACCCTTGGTGGGCCGGCTCATTCACCAGCTCCTCACAGATATTGGTCGGTACCACCCACAG
Seq A exon
GTGCGTGCAGACCCTAAGCATTTTCTCATGGAGCCACGGACGGACCATCGCTTTGGTGGCCTTTTCAAGTGTTCTCTGTTTGCTTAG
Seq C2 exon
GCCCTCATCTACCCCCTGACGGTGGCTTCTAAGTCTACCACCACAGCCCGTCACAATGCAGCCAACAAGATCCTGAAGAACATGTGCGAGCACAGCAACACGCTAGTCCAGCAGGCCATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615:ENSRNOT00000014167:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAATTGACACGCCCAGACC
R:
GCTCGCACATGTTCTTCAGGA
Band lengths:
170-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]