RnoINT0095730 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214796046-214797384:+
Coord C1 exon
chr1:214796046-214796243
Coord A exon
chr1:214796244-214796659
Coord C2 exon
chr1:214796660-214797384
Length
416 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGC
5' ss Score
9.89
3' ss Seq
CTTTTATCGCTTTTGCACAGGTT
3' ss Score
7.72
Exon sequences
Seq C1 exon
CCTGCACATGCATCTATGAGGGCCGTACCTACAACTACAATGATGTTGTCTACAACACCACTGATGGCCTCGGTGCCTGCTTAGTAGCCATCTGCAAAGACAACGGGACTATAAAACGCACGACTGAAGAGTGCCCTGAAGTCCCGTCTACCACACCATTCATATTCACCACCACTCTGACACCCCTTACCACAAACG
Seq A exon
GTAAGCCCATACCAGGTTTTCTGGGAGCCCCTGGACTCTAAACTATTATGTTAACCCAGGGAAAGGCTTGACCACATCTGGGATAAGGGAAGTTGTCAAGGGAGCTGTAGAGGCATGCTGGGTCCTGACCCACTGTCTGGTAGGCCAGGCTCTGCCTGTATCCATGACCTCACCTCTCCCTTTCTAGTCCCCAAGACTCTTTTGCACAACTAATAGGGATGCCACCAGAGACCACTAAAACCCCCAGGTTCCTCTTTAGTGTATCCTACCTCAGTCAGTGAGCTCTCTCCAGACTAGCTGGCAGGTCCTGGGTTCAGGTCAGGAATGGTCCTAACTTTTGGAAATGGGTGGAGCCCTCTGTTTCTAGACTCTGAGGTCAGAGGAACCGAGCAGGGCCTTTTATCGCTTTTGCACAG
Seq C2 exon
GTTCAGCTTCCACTGCGTCTACTGTGTGTGTTCGTGAGGTCTGCCACTGGTCCAGTTGGTATGATGAGAGCCATCCAGAGGCTGGCATGTTAGGCGGGGACTTTGAAACATTTGAGAACCTGAGGAGGAAAGGGTACCAGGTGTGTCAAACCCCCGTTGCCATTGAATGCCGAGCAGTGAAGTTCCCCAGCCTGGACTTAGAGAAGCTGGGTCAGAAGGTAAACTGTGACCTATCCTCTGGGTTGAGATGCTTCAACAATGAACAGAGCCCCCCACTGTGCCACAACTATGAGCTGAGGGTTCTGTGTTGTGATTATGTGCCCTGTGGCTCCTCTCTGACCTCGGGTGTGAGTACCACTCCCTCTCAGTCTGACACCAGTAAAAACCCCTCTCTGCCCACACTTACCACTCATACAGCATCCTCAAAATCACAGTCCTGGACCAGAGGTGGGAAAGAGACATCACTGGATAAAACTCACAGCTCAAGGCAAACAGTGACGTTTGCCTCAAAGAGCAGACCTACTTCATCTCCTACGTCATCTAGAAACTCAGCCAGCAGCCTCCCCTTGTCCAACCCTACCTGGACTACAACAGTGAAAGGGACCAATGAGAACACAGTGCTTAGCTCCCAGACAACAGCAGAATTCACTTCACACACCAGGTCCACTTCAAGCCCCAACACAGTCACTCTCCAGACTAGCTGGCAGGTCCTGGGTTCAGGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=NA C2=0.496
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF133301=Mucin2_WxxW=WD(100=36.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGTCCCGTCTACCACA
R:
CATAGTTGTGGCACAGTGGGG
Band lengths:
355-771
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]